نتایج جستجو برای: consensus sequence

تعداد نتایج: 478416  

Journal: :Bioinformatics 2017
Mateusz Kaduk Erik L. L. Sonnhammer

Motivation The initial step in many orthology inference methods is the computationally demanding establishment of all pairwise protein similarities across all analysed proteomes. The quadratic scaling with proteomes has become a major bottleneck. A remedy is offered by the Hieranoid algorithm which reduces the complexity to linear by hierarchically aggregating ortholog groups from InParanoid al...

2015
Davy Maddelein Niklaas Colaert Iain Buchanan Niels Hulstaert Kris Gevaert Lennart Martens

The iceLogo web server and SOAP service implement the previously published iceLogo algorithm. iceLogo builds on probability theory to visualize protein consensus sequences in a format resembling sequence logos. Peptide sequences are compared against a reference sequence set that can be tailored to the studied system and the used protocol. As such, not only over- but also underrepresented residu...

Journal: :Scandinavian Journal of Trauma, Resuscitation and Emergency Medicine 2021

Journal: :Bioinformatics 2002
Jonathan M. Keith Peter Adams Darryn E. Bryant Dirk P. Kroese Keith R. Mitchelson Duncan A. E. Cochran Gita H. Lala

MOTIVATION A consensus sequence for a family of related sequences is, as the name suggests, a sequence that captures the features common to most members of the family. Consensus sequences are important in various DNA sequencing applications and are a convenient way to characterize a family of molecules. RESULTS This paper describes a new algorithm for finding a consensus sequence, using the p...

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