Ribonucleic acid (RNA) molecules are known to undergo conformational changes in response various environmental stimuli including temperature, pH, and ligands.

Most biological reactions rely on interplay between binding and changes in both macromolecular structure and dynamics. Practical understanding of this interplay requires detection of critical intermediates and determination of their binding and conformational characteristics. However, many of these species are only transiently present and they have often been overlooked in mechanistic studies o...

a series of schiff bases of ni(ii) and cu(ii) using acetylacetone (acac), salicylaldehyde (sal), ethylenediamine (en), and o-phenylendiarnine (dabe) were prepared and characterized. the electronic spectra of some copper chelates in various organic solvents depend strongly on the solvent used and the d-d band of cu(ii) shifts to red with the increase of the donor number (dn) of solvent. the colo...

Protein interactions are often accompanied by significant changes in conformation. We have analyzed the relationships between protein structures and the conformational changes they undergo upon binding. Based upon this, we introduce a simple measure, the relative solvent accessible surface area, which can be used to predict the magnitude of binding-induced conformational changes from the struct...

Conformational changes upon protein-protein association are the key element of the binding mechanism. The study presents a systematic large-scale analysis of such conformational changes in the side chains. The results indicate that short and long side chains have different propensities for the conformational changes. Long side chains with three or more dihedral angles are often subject to large...