A hidden Markov model-based gene-finding system called Genie was applied to the genomic Adh region in Drosophila melanogaster as a part of the Genome Annotation Assessment Project (GASP). Predictions from three versions of the Genie gene-finding system were submitted, one based on statistical properties of coding genes, a second included EST alignment information, and a third that integrated pr...

The GENIE project has built a Grid enabled framework that facilitates the integration, execution and management of component models for the study of the Earth system over millennial timescales. The existing framework supports collaborative study of GENIE models across heterogeneous compute grids through scripted workflows in the Matlab environment. In this paper, Windows Workflow Foundation tec...

In this paper, we consider the problem of learning the genetic interaction map, i.e., the topology of a directed acyclic graph (DAG) of genetic interactions from noisy double-knockout (DK) data. Based on a set of well-established biological interaction models, we detect and classify the interactions between genes. We propose a novel linear integer optimization program called the Genetic-Interac...

سابقه و هدف: به ­دلیل توسعه رشد جمعیت انسان، نیاز انسان منابع ضروری افزایش یافته است. فعالیت‌های مربوط صنایع همچنین کشاورزی به­ طور گسترده‌ای زمین‌های را آلوده کرده ترکیبات نفتی فلزات سنگین هر دو از آلاینده‌های رایج موجود در خاک‌هایی هستند که با فاضلاب تصفیه نشده آبیاری شده‌اند سلامت محیط زیست خطر مواجه می‌کنند. آلودگی خاک می‌تواند سبب کاهش امکان زراعت، نهایت تولید غذا برای شود. جنوب شهر تهران ...

Decision support systems can play a role in improving the ability of decision makers to act as utility maximizers in crisis situations. This paper demonstrates the ability of one such decision support system, GENIE, to help decision makers maximize their objectives in a crisis negotiation. GENIE is described in detail, followed by the presentation of preliminary experimental results evaluating ...