This document provides a description of the partial evaluator SAGE , a partial evaluator written in the logic programming language Gödel which specialises Gödel programs. Although capable of specialising any Gödel program SAGE was developed primarily to specialise meta-programs which use a ground representation. To assist users of SAGE this document gives an overview of SAGE , a manual for its ...

Landscape modification due to rapidly expanding energy development, in particular oil and gas, in the westernUSA, have prompted concerns over how such developments may impact wildlife. One species of conservation concern across much of the Intermountain West is the greater sage-grouse (Centrocercusurophasianus). Sage-grouse have been petitioned for listing under provisions of the Endangered Spe...

MOTIVATION Serial Analysis of Gene Expression (SAGE) is a powerful technology for measuring global gene expression, through rapid generation of large numbers of transcript tags. Beyond their intrinsic value in differential gene expression analysis, SAGE tag collections afford abundant information on the size and shape of the sample transcriptome and can accelerate novel gene discovery. These la...

BACKGROUND Serial Analysis of Gene Expression (SAGE) is a DNA sequencing-based method for large-scale gene expression profiling that provides an alternative to microarray analysis. Most analyses of SAGE data aimed at identifying co-expressed genes have been accomplished using various versions of clustering approaches that often result in a number of false positives. PRINCIPAL FINDINGS Here we...

SAGE is an open source computer algebra system implemented using an object-oriented categorical framework, with methods for objects, methods for their elements, and methods for their morphisms. Currently, SAGE has the ability to deal with abelian groups, permutation groups, and matrix groups over a finite field. This paper will present an overview of the implementations of the group-theoretical...

Greater sage-grouse Centrocercus urophasianus (Bonaparte) currently occupy approximately half of their historical distribution across western North America. Sage-grouse are a candidate for endangered species listing due to habitat and population fragmentation coupled with inadequate regulation to control development in critical areas. Conservation planning would benefit from accurate maps delin...

The time series of differences in coincident measurements of ozone by Stratospheric Aerosol and Gas Experiment (SAGE) and by Solar Backscattered Ultraviolet (SBUV), SBUV/2, Umkehr and Microwave Limb Sounder (MLS) are analyzed, and the slopes in the differences are calculated. SAGE ozone measurements are also compared against those by HALOE. The purpose of these comparisons is to look for statis...

GENETICS, SOCIAL SCIENCES Retraction for ‘‘PKNOX2 gene is significantly associated with substance dependence in European-origin women,’’ by Xiang Chen, Kelly Cho, Burton H. Singer, and Heping Zhang, which published online August 31, 2009, in Proc Natl Acad Sci USA (10.1073/pnas.0908521106). The authors wish to retract this paper because its publication violates the Gene Environment Association ...

To comprehensively identify transcription start sites and the frequencies of individual mRNAs in human cell libraries, a method of 5' end Serial Analysis of Gene Expression (SAGE) was developed recently, which makes it possible to collect a large amount of start site information, and subsequently, we have established a related database server called 5'SAGE. This database displays the observed f...