The Structural Classification of Proteins (SCOP) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationships. The SCOP hierarchy comprises the following levels: Species, Protein, Family, Superfamily, Fold and Class. While keeping the original classification scheme intact, we have changed the production of SCOP in order to...

We introduce two variations of the cops and robber game on graphs. These games yield invariants in Z+∪{∞} for any connected graph Γ, weak cop number wCop(Γ) strong sCop(Γ). satisfy that sCop(Γ)≤wCop(Γ). Any is finite or a tree has one. new are preserved under small local perturbations graph, specifically, both numbers quasi-isometric More generally, we prove if Δ quasi-retract Γ then wCop(Δ)≤wC...

Learning and memory depend on the time of day in various organisms, but it is not clear whether and how the circadian clock regulates memory performance. Here we show that consolidation of long-term recognition memory is a circadian-regulated process, which is blunted by disruption of the hippocampal clock. We focused on SCOP, a key molecule regulating hippocampus-dependent long-term memory for...

The SCOP (Structural Classification of Proteins) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationships. Protein domains in SCOP are grouped into species and hierarchically classified into families, superfamilies, folds and classes. Recently, we introduced a new set of features with the aim of standardizing access to...

The Structural Classification of Proteins (SCOP) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationships. Protein domains in SCOP are hierarchically classified into families, superfamilies, folds and classes. The continual accumulation of sequence and structural data allows more rigorous analysis and provides importan...

Abstract In this paper, a transient analysis is performed in order to evaluate how effective climate data affect the determination of seasonal coefficient performance ASHPs. Three Italian cities, characterized by different climates, are considered as reference case studies and influence real meteorological data, collected from years, on heat pump SCOP performed. The carried out employing dynami...

The analysis and prediction of protein-protein interaction sites from structural data are restricted by the limited availability of structural complexes that represent the complete protein-protein interaction space. The domain classification schemes CATH and SCOP are normally used independently in the analysis and prediction of protein domain-domain interactions. In this article, the effect of ...