Statistical significance of a local sequence alignment depends not only on the similarity score and on the sequence lengths, but also on a length of the alignment. Dependence of the alignment significance on the length of the sequences has been analyzed earlier, and is based on the idea that the longer sequences have more chances to share a local similarity with a bigger score. To the best of o...

UNLABELLED OrderedList is a Bioconductor compliant package for meta-analysis based on ordered gene lists like those resulting from differential gene expression analysis. Our package quantifies the similarity between gene lists. The significance of the similarity score is estimated from random scores computed on perturbed data. OrderedList illustrates list similarity in intuitive plots and deter...

Image thresholding is an important field in image processing. It has been employed to segment the images and extract objects. A variety of algorithms have been proposed in this field. However, these methods perform well on the images without noise, and their results on the noisy images are not good. Neutrosophic set (NS) is a new general formal framework to study the neutralities' origin, natur...

Vulnerabilities in biometric systems including spoofing has emerged as an important issue. The focus of this work is on characterization of ‘perspiration pattern’ in a time-series of fingerprint images for liveness detection. By using information in the high pass bands of the images the similarity score for the two images is calculated to determine the uniqueness of the perspiration pattern. In...

Digital libraries do not assign importance/relevance scores to their publications, authors, or publication venues, even though scores are potentially useful for (a) providing comparative assessment, or ”importances”, of publications, authors, publication venues, (b) ranking publications returned in search outputs, and (c) using scores in locating similar publications. Using social networks and ...

Existing methods for alignments are based on edition costs computed additionally position by position, according to a fixed substitution matrix: a substitution always has the same weight regardless of the position. Nevertheless the biologist favours a similarity according to his knowledge of the structure or the function of the sequences considered. In the particular case of proteins, we presen...

Annotations of the genes and their products are largely guided by inferring homology. Sequence similarity is the primary measure used for annotation purpose however, the domain content and order were given less importance albeit the fact that domain insertion, deletion, positional changes can bring in functional varieties. Of late, several methods developed quantify domain architecture similari...

Recommender system data presents unique challenges to the data mining, machine learning, and algorithms communities. The high missing data rate, in combination with the large scale and high dimensionality that is typical of recommender systems data, requires new tools and methods for efficient data analysis. Here, we address the challenge of evaluating similarity between two users in a recommen...