نتایج جستجو برای: secondary structures

تعداد نتایج: 742016  

Journal: :Journal of computational biology : a journal of computational molecular cell biology 2012
Azadeh Saffarian Mathieu Giraud Antoine de Monte Hélène Touzet

RNA locally optimal secondary structures provide a concise and exhaustive description of all possible secondary structures of a given RNA sequence, and hence a very good representation of the RNA folding space. In this paper, we present an efficient algorithm that computes all locally optimal secondary structures for any folding model that takes into account the stability of helical regions. Th...

2005
Benoit GRANIER Colette DUEZ Sophie LEPAGE Serge ENGLEBERT Jean-Marie GHUYSEN

Benoit GRANIER,* Colette DUEZ,* Sophie LEPAGE,* Serge ENGLEBERT,* Jean DUSART,*T Otto DIDEBERG,* Jozef VAN BEEUMEN,t Jean-Marie FRERE* and Jean-Marie GHUYSEN* *Centre d'Ingenierie des Proteines, Universite de Liege, Institut de Chimie, B6, B-4000 Sart Tilman (Liege 1), and tLaboratorium voor Microbiologie en Microbiele Genetica, Rijksuniversiteit-Gent, K.L. Ledeganckstraat 35, B-9000 Gent, Belgium

Journal: :PLoS ONE 2008
Abigail Manson McGuire James E. Galagan

BACKGROUND Recent evidence suggests that the number and variety of functional RNAs (ncRNAs as well as cis-acting RNA elements within mRNAs) is much higher than previously thought; thus, the ability to computationally predict and analyze RNAs has taken on new importance. We have computationally studied the secondary structures in an alignment of six Aspergillus genomes. Little is known about the...

Journal: :iranian journal of parasitology 0
seyed sajjad hasheminasab

background: genomic dna was isolated from parabronema skrjabini . rrna region was amplified and sequenced. methods : the rna secondary structure was predicted using mfold software (http://mfold.rit.albany.edu). the secondary structure with bulge, hairpins, helices, interior, external and multi loops was predicted for 5.8srdna of our sequence of p. skrjabini and a sequence of p. skrjabini and tw...

Journal: :Journal of the Spectroscopical Society of Japan 1995

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