A hierarchical computational approach (all-atom residue to all-residue peptide) is introduced to study self-organizing structures of peptides as a function of temperature. A simulated residue-residue interaction involving all-atom description, analogous to knowledge-based analysis (with different input), is used as an input to a phenomenological coarse-grained interaction for large scales compu...

local information about tillage intensity and ground residue coverage is useful for policies in agricultural extension, tillage implement design and upgrading management methods. the current methods for assessing crop residue coverage and tillage intensity such as residue weighing methods, line-transect and photo comparison methods are tedious and time-consuming. the present study was devoted t...

the sensitivity analysis for multi-attribute decision making (madm) problems is important for two reasons: first, the decision matrix as the source of the results of a decision problem is inaccurate because it sorts the alternatives in each criterion inaccurately. second, the decision maker may change his opinions in a time period because of changes in the importance of the criteria and in the ...

introduction various factors like climatic conditions, vegetation, soil properties, topography, time, plant residue quality and crop management strategies affect the decomposition rate of organic carbon (oc) and its residence time in soil. plant residue management concerns nutrients recycling, carbon recycling in ecosystems and the increasing co2 concentration in the atmosphere. plant residue d...

We present a method to increase the dynamical range of a Residue Number System (RNS) by adding virtual RNS layers on top of the original RNS, where the required modular arithmetic for a modulus on any non-bottom layer is implemented by means of an RNS Montgomery multiplication algorithm that uses the RNS on the layer below. As a result, the actual arithmetic is deferred to the bottom layer. The...

Ion channels are multi-subunit, multi-modal proteins that exhibit hierarchical organization, whereby the different components interact in a cooperative manner to realize a tunable function of the channel as a whole. Synergy is thus a fundamental aspect of ion channels threaded across all three complex system characteristics, namely, hierarchy, dynamism, and regulation. A full understanding of a...

Protein contacts contain important information for protein structure and functional study, but contact prediction is very challenging especially for protein families without many sequence homologs. Recently evolutionary coupling (EC) analysis, which predicts contacts by analyzing residue co-evolution in a single target family, has made good progress due to better statistical and optimization te...