A novel haplotype association method is presented, and its power is demonstrated. Relying on a statistical model for linkage disequilibrium (LD), the method first infers ancestral haplotypes and their loadings at each marker for each individual. The loadings are then used to quantify local haplotype sharing between individuals at each marker. A statistical model was developed to link the local ...

Utilization of fecundity genes such as GDF9 and BMP15 can help improve reproductive traits in sheep breeding programme. To evaluate effects of missense mutations on protein function, the polymorphisms of GDF9 and BMP15 genes were screened in twelve mehraban sheep using DNA sequencing, followed by protein structure modeling. Six single nucleotide polymorphism (SNPs) known as FecG mutations (G1-G...

Single Nucleotide Polymorphisms (SNPs) are the most usual form of polymorphism in human genome.Analyses of genetic variations have revealed that individual genomes share common SNP-haplotypes. Theparticular pattern of these common variations forms a block-like structure on human genome. In this work,we develop a new method based on the Perfect Phylogeny Model to identify haplo...

lactoferrin (lf) is a bioactive protein present in all external secretions such as milk that plays important role in the innate host defense. therefore, the lf has a major role in bovine mammary gland defense during mastitis. in this study, 5’-flanking region of bovine lf gene containing three single nucleotide polymorphisms (snps) at positions −602 (t/g), −600 (a/g) and -586 (t/c) were screene...

In this study, 3 haplotypes were found in populations of Phellodendron amurense based on two combined cpDNA regions (psbA-trnH and trnT-trnL). Nucleotide diversity haplotype 0.43×10 -3 0.41, respectively at the level species. The AMOVA revealed that only 8.53% variation was explained by differences among geographical groups, whereas inter-population intrapopulation 18.32% 71.35% variation, resp...

background: the prevalence of hepatitis c virus (hcv) infection is increasing worldwide. cytotoxic t-lymphocyte-associated protein 4 (ctla-4) may play a role in the intensity of the disease. the aim of this study was to evaluate the association between genetic variants of the ctla-4 and hcv infection. methods: restriction fragment length polymorphism-polymerase chain reaction (rflp-pcr) was per...