AIMS This study was carried out to evaluate the presence of Shiga toxin-producing Escherichia coli (STEC) and E. coli O157:H7 in shellfish from French coastal environments. METHODS AND RESULTS Shellfish were collected in six growing areas or natural beds (B category) and nonfarming areas (D category) from July 2002 to August 2004. PCR detection of stx genes was performed on homogenized whole ...

Despite its importance in the nitrogen cycle, little is known about nitrite oxidation at high temperatures. In order to bridge this knowledge gap, enrichment cultures were inoculated with sediment slurries from a variety of geothermal springs. While attempts failed to enrich nitrite-oxidizing bacteria (NOB) from >10 hot spring samples at temperatures ≥61 °C, NOB were successfully enriched from ...

We previously showed that hepatitis B virus (HBV) X protein (HBx) could promote the trimethylation of histone H3 lysine 9 (H3K9me3) to repress tumor suppressor genes in hepatocellular carcinoma (HCC). In this work, we analyze 23,148 human promoters using ChIP-chip to determine the effects of HBx on H3K9me3 enrichments in hepatoma cells with transfection of HBx-expressing plasmid. Immunohistoche...

Introduction: Hydrogen isotopic compositions in interplanetary dust particles (IDPs), in the form of D enrichments, provide unequivocal evidence for the survival of presolar organic matter (e.g., [1-4]). D/H enrichments of up to 50,000 o / oo have been reported from IDPs and such extreme values are presumably produced by ion-molecule reactions at 10-50 K in molecular clouds [1]. Although the ph...

To further validate the doubly labeled water method for measurement of CO2 production and energy expenditure in humans, we compared it with near-continuous respiratory gas exchange in nine healthy young adult males. Subjects were housed in a respiratory chamber for 4 days. Each received 2H2(18)O at either a low (n = 6) or a moderate (n = 3) isotope dose. Low and moderate doses produced initial ...

Methionine metabolism forms homocysteine via transmethylation. Homocysteine is either 1) condensed to form cystathionine, which is cleaved to form cysteine, or 2) remethylated back to methionine. Measuring this cycle with the use of isotopically labeled methionine tracers is problematic, because the tracer is infused into and measured from blood, whereas methionine metabolism occurs inside cell...

Plasma glucose 2H enrichment was quantified by 2H NMR in patients with cirrhosis (n=6) and healthy subjects (n=5) fasted for 16 h and given 2H(2)O to approximately 0.5% body water. The percent contribution of glycogenolysis and gluconeogenesis to glucose production (GP) was estimated from the relative enrichments of hydrogen 5 and hydrogen 2 of plasma glucose. Fasting plasma glucose levels were...

Genome wide association studies (GWAS) provide a powerful approach for uncovering disease-associated variants in human, but fine-mapping the causal variants remains a challenge. This is partly remedied by prioritization of disease-associated variants that overlap GWAS-enriched epigenomic annotations. Here, we introduce a new Bayesian model RiVIERA (Risk Variant Inference using Epigenomic Refere...

[1] Laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) analyses of B and Li in serpentinized peridotites from the Feather River Ophiolite (California) indicates that B is enriched in serpentine minerals compared to the whole-rock and less altered olivine grains, while Li in serpentine is depleted or comparable to whole-rock Li. The high B contents of serpentine minerals cor...

The capacity for Fe(sup3+) to serve as an electron acceptor in the microbial degradation of monochlorinated and nonchlorinated aromatic compounds was investigated in anoxic sediment enrichments. The substrates tested included phenol, benzoate, aniline, their respective monochlorinated isomers, o-, m-, and p-cresol, and all six dimethylphenol isomers. Phenol and 2-, 3-, and 4-chlorophenol were u...