The formation of DNA-based nanostructures involves the binding of different kinds of ligands to DNA as well as the interaction of DNA molecules with each other. Complex formation between ligand and DNA can alter physicochemical properties of the DNA molecule. In the present work, the accessibility of DNAligand complexes to cleavage by DNase I are considered, and the exact algorithms for analysi...

Mn( ii ), Co( and Ni( ) morpholine 2,2′-bipyridine complexes gave potent DNA cleavage, antimicrobial antioxidant activity. Calculations support the results, with Co Ni showing better anticancer efficacy than cisplatin.

DNA topoisomerase II (Top2) is the target of some of the most effective anticancer DNA intercalators. To determine the effect of intercalating ligands at defined positions relative to a known DNA cleavage site for human Top2alpha, we synthesized oligodeoxynucleotides containing single trans-opened benzo[a]pyrene 7,8-diol 9,10-epoxide (DE) deoxyadenosine (dA) adducts of known absolute configurat...

Copper (II) complexes of three phosphonate ligands were prepared and fully characterized by elemental analysis, spectral and thermal studies. The IR spectral data showed that the phosphonate compounds behave as bidentate ligands coordinating to the copper ion through the P=O and NH groups. The electronic spectroscopic data support a distorted octahedral geometry around copper ion. The activity ...

Background: The success of in vitro-fertilization (IVF) cycles is determined large part by the quality embryo cleavage, which turn, dependent on culture media (CM). Many factors can influence CM, one levels Cell Free Deoxyribonucleic acid (DNA). Understanding association between Cell-free DNA CM and cleavage could help improve IVF techniques.
 Methods: This prospective study was conducted ...

DNA minicircles found within the kinetoplast of the trypanosomatid Crithidia fasciculata, like those of most other kinetoplastid species, are heterogeneous in sequence. The pattern of minicircle DNA fragments generated by cleavage of kinetoplast DNA with various restriction enzymes has been used to demonstrate this heterogeneity. Here we describe a strain of Crithidia fasciculata in which more ...

In this study, the cDNA Growth Hormone (cGH) of the Belugasturgeon (Husohuso) and Russian sturgeon (Acipensergueldenstaedtii) were cloned and sequenced, and phylogenetic relationships were examined using nucleic acid and amino acid sequences. The nucleotide sequence of the Beluga GH has an open reading frame of 645 nucleotides encoding a protein 214 amino acid residues. The signal peptide cleav...

Chromatin endogenous cleavage (ChEC) uses fusion of a protein of interest to micrococcal nuclease (MNase) to target calcium-dependent cleavage to specific genomic loci in vivo. Here we report the combination of ChEC with high-throughput sequencing (ChEC-seq) to map budding yeast transcription factor (TF) binding. Temporal analysis of ChEC-seq data reveals two classes of sites for TFs, one displ...

In retroviral integration, the viral integration protein (integrase) mediates a concerted DNA cleavage-ligation reaction in which the target DNA is cleaved and the resulting 5' ends of target DNA are joined to the 3' ends of viral DNA. Through an oligonucleotide substrate that mimics the recombination intermediate formed by this initial cleavage-ligation reaction, the purified integrase of huma...