Two previously uncharacterized potential broad-spectrum mercury (Hg) resistance operons (mer) are present on the chromosome of the soil Alphaproteobacteria Xanthobacter autotrophicus Py2. These operons, mer1 and mer2, contain two features which are commonly found in mer operons in the genomes of soil and marine Alphaproteobacteria, but are not present in previously characterized mer operons: a ...

Heavy metals have been shown to be strong inhibitors of nitrification in wastewater treatment plants. In this research, the effects of cadmium, copper, and mercury on Nitrosomonas europaea were studied in quasi-steady-state batch reactors. When cells were exposed to 1 microM CdCl2, 6 microM HgCl2, or 8 microM CuCl2, ammonia oxidation rates were decreased by about 90%. Whole-genome transcription...

In this paper, we review the properties of homogeneous multiscale entanglement renormalization ansatz (MERA) to describe quantum critical systems. We discuss in more detail our results for one-dimensional (1D) systems (the Ising and Heisenberg models) and present new data for the 2D Ising model. Together with the results for the critical exponents, we provide a detailed description of the numer...

We improve upon a recently introduced efficient quantum state reconstruction procedure targeted to states well approximated by the multiscale entanglement renormalization ansatz (MERA), e.g., ground states of critical models. We show how to numerically select a subset of experimentally accessible measurements which maximize information extraction about renormalized particles, thus dramatically ...

Ligand diffusion through a protein interior is a fundamental process governing biological signaling and enzymatic catalysis. A complex topology of channels in proteins leads often to difficulties in modeling ligand escape pathways by classical molecular dynamics simulations. In this paper, two novel memetic methods for searching the exit paths and cavity space exploration are proposed: Memory E...