Starch is a complex branched glucose polymer whose branch molecular weight distribution (the chain-length distribution, CLD) influences nutritionally important properties such as digestion rate. Chain-stopping in starch biosynthesis is by starch branching enzyme (SBE). Site-directed mutagenesis was used to modify SBEIIa from Zea mays (mSBEIIa) to produce mutants, each differing in a single cons...

Assessing the Convergence of Markov Chain Monte Carlo Methods for Bayesian Inference of Phylogenetic Trees In biology, it is commonly of interest to investigate the ancestral pattern that gave rise to a currently existing group of individuals, such as genes or species. This ancestral pattern is frequently represented pictorially by a phylogenetic tree. Due to the growing popularity of Bayesian ...

abstract agricultural scientists have developed considerable interest in modeling and generation of rainfall as new ways of analyzing rainfall data and assessing its impact on agriculture. a combination of markov chain and gamma distribution function is recognized as a simple approach and is demonstrated to be effective in generating daily rainfall data for many environments. thus the availabil...

in this paper, the distribution network for multi-level supply chain has been studied. products produced in factories are sent to customers through warehouses and distribution centers based on specific demands. warehouses as holding inventory facilities are located close to factories and the distribution centers are placed in the most accessible locations for services near customers. each item ...

We studied the influence of branch autonomy on the growth of reproductive and vegetative organs by establishing different patterns of fruit distribution within and between large branch units (scaffolds) in mature peach trees (Prunus persica (L.) Batsch cv. 'Elegant Lady'). Different patterns of fruit distribution were established by defruiting either whole scaffolds (uneven fruit distribution b...

Several stochastic models of character change, when implemented in a maximum likelihood framework, are known to give a correspondence between the maximum parsimony method and the method of maximum likelihood. One such model has an independently estimated branch-length parameter for each site and each branch of the phylogenetic tree. This model--the no-common-mechanism model--has many parameters...

The Holliday junction, the key intermediate of recombination, is generated by strand exchange resulting in a covalent connection between two recombining DNA molecules. Translocation of a Holliday junction along DNA, or branch migration, progressively exchanges one DNA strand for another and determines the amount of information that is transferred between two recombining partners. In Escherichia...

The evolution of aligned DNA sequence sites is generally modeled by a Markov process operating along the edges of a phylogenetic tree. It is well known that the probability distribution on the site patterns at the tips of the tree determines the tree and its branch lengths. However, the number of patterns is typically much larger than the number of edges, suggesting considerable redundancy in t...

The evolution of aligned DNA sequence sites is generally modeled by a Markov process operating along the edges of a phylogenetic tree. It is well known that the probability distribution on the site patterns at the tips of the tree determines the tree topology, and its branch lengths. However, the number of patterns is typically much larger than the number of edges, suggesting considerable redun...