نتایج جستجو برای: noncatalytic

تعداد نتایج: 704  

2014
Hao Chen Yunjie Zhao Haotian Li Dongyan Zhang Yanzhao Huang Qi Shen Rachel Van Duyne Fatah Kashanchi Chen Zeng Shiyong Liu Chandra Verma

Most inhibitors of Cyclin-dependent kinase 2 (CDK2) target its ATP-binding pocket. It is difficult, however, to use this pocket to design very specific inhibitors because this catalytic pocket is highly conserved in the protein family of CDKs. Here we report some short peptides targeting a noncatalytic pocket near the interface of the CDK2/Cyclin complex. Docking and molecular dynamics simulati...

Journal: :Cell 2007
Carolyn S. Sevier Hongjing Qu Nimrod Heldman Einav Gross Deborah Fass Chris A. Kaiser

Introduction of disulfide bonds into proteins entering the secretory pathway is catalyzed by Ero1p, which generates disulfide bonds de novo, and Pdi1p, which transfers disulfides to substrate proteins. A sufficiently oxidizing environment must be maintained in the endoplasmic reticulum (ER) to allow for disulfide formation, but a pool of reduced thiols is needed for isomerization of incorrectly...

Journal: :Structure 2005
Jianhua Gan Joseph E Tropea Brian P Austin Donald L Court David S Waugh Xinhua Ji

Bacterial ribonuclease III (RNase III) can affect RNA structure and gene expression in either of two ways: as a processing enzyme that cleaves double-stranded (ds) RNA, or as a binding protein that binds but does not cleave dsRNA. We previously proposed a model of the catalytic complex of RNase III with dsRNA based on three crystal structures, including the endonuclease domain of RNase III with...

Journal: :Neuron 2011
Hideto Takahashi Pamela Arstikaitis Tuhina Prasad Thomas E. Bartlett Yu Tian Wang Timothy H. Murphy Ann Marie Craig

Neurotrophin receptor tyrosine kinases (Trks) have well-defined trophic roles in nervous system development through kinase activation by neurotrophins. Yet Trks have typical cell-adhesion domains and express noncatalytic isoforms, suggesting additional functions. Here we discovered noncatalytic TrkC in an unbiased hippocampal neuron-fibroblast coculture screen for proteins that trigger differen...

Journal: :Proceedings of the National Academy of Sciences 1968

2015
J Michael Bradshaw Jesse M McFarland Ville O Paavilainen Angelina Bisconte Danny Tam Vernon T Phan Sergei Romanov David Finkle Jin Shu Vaishali Patel Tony Ton Xiaoyan Li David G Loughhead Philip A Nunn Dane E Karr Mary E Gerritsen Jens Oliver Funk Timothy D Owens Erik Verner Ken A Brameld Ronald J Hill David M Goldstein Jack Taunton

Drugs with prolonged on-target residence times often show superior efficacy, yet general strategies for optimizing drug-target residence time are lacking. Here we made progress toward this elusive goal by targeting a noncatalytic cysteine in Bruton's tyrosine kinase (BTK) with reversible covalent inhibitors. Using an inverted orientation of the cysteine-reactive cyanoacrylamide electrophile, we...

2014
Savva Zorov Yulia Yuzenkova Vadim Nikiforov Konstantin Severinov Nikolay Zenkin

Multisubunit RNA polymerase, an enzyme that accomplishes transcription in all living organisms, is a potent target for antibiotics. The antibiotic streptolydigin inhibits RNA polymerase by sequestering the active center in a catalytically inactive conformation. Here, we show that binding of streptolydigin to RNA polymerase strictly depends on a noncatalytic magnesium ion which is likely chelate...

Journal: :Vision Research 2004
Hakim Muradov Kimberly K. Boyd Nikolai O. Artemyev

Photoreceptor cGMP phosphodiesterases (PDE6 family) are modular enzymes with each catalytic subunit containing two N-terminal regulatory GAF domains, GAF A and GAF B. The GAF A domains contribute to dimerization of the PDE6 catalytic subunits and to binding of the inhibitory Pgamma subunits, and represent candidate sites for noncatalytic binding of cGMP. We performed a mutational analysis of se...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2015
Sarah Coughlin Mark Noviski James L Mueller Ammarina Chuwonpad William C Raschke Arthur Weiss Julie Zikherman

The receptor-like tyrosine phosphatase CD45 regulates antigen receptor signaling by dephosphorylating the C-terminal inhibitory tyrosine of the src family kinases. However, despite its abundance, the function of the large, alternatively spliced extracellular domain of CD45 has remained elusive. We used normally spliced CD45 transgenes either incorporating a phosphatase-inactivating point mutati...

Journal: :Journal of Chemical Information and Computer Sciences 1996
Andrew V. Zeigarnik Oleg N. Temkin Danail Bonchev

A structural analysis and classification of the reaction networks of the multiroute reactions is made using the bipartite graph method. Simple submechanisms of the overall reaction mechanism are defined, so as to correspond to routes with minimal stoichiometric numbers. The possibility for balancing the intermediate species is advocated as the major classificational criterion which discriminate...

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