نتایج جستجو برای: large genomic rearrangements

تعداد نتایج: 1142013  

2016
Susanne Lorenz Tale Barøy Jinchang Sun Torfinn Nome Daniel Vodák Jan-Christian Bryne Anne-Mari Håkelien Lynnette Fernandez-Cuesta Birte Möhlendick Harald Rieder Karoly Szuhai Olga Zaikova Terje C. Ahlquist Gard O. S. Thomassen Rolf I. Skotheim Ragnhild A. Lothe Patrick S. Tarpey Peter Campbell Adrienne Flanagan Ola Myklebost Leonardo A. Meza-Zepeda

In contrast to many other sarcoma subtypes, the chaotic karyotypes of osteosarcoma have precluded the identification of pathognomonic translocations. We here report hundreds of genomic rearrangements in osteosarcoma cell lines, showing clear characteristics of microhomology-mediated break-induced replication (MMBIR) and end-joining repair (MMEJ) mechanisms. However, at RNA level, the majority o...

Journal: :Journal of bacteriology 2006
Ludovic Vial Céline Lavire Patrick Mavingui Didier Blaha Jacqueline Haurat Yvan Moënne-Loccoz René Bally Florence Wisniewski-Dyé

The plant growth-promoting rhizobacterium Azospirillum lipoferum 4B generates in vitro at high frequency a stable nonswimming phase variant designated 4V(I), which is distinguishable from the wild type by the differential absorption of dyes. The frequency of variants generated by a recA mutant of A. lipoferum 4B was increased up to 10-fold. The pleiotropic modifications characteristic of the ph...

2018
Li C Xia John M Bell Christina Wood-Bouwens Jiamin J Chen Nancy R Zhang Hanlee P Ji

Large genomic rearrangements involve inversions, deletions and other structural changes that span Megabase segments of the human genome. This category of genetic aberration is the cause of many hereditary genetic disorders and contributes to pathogenesis of diseases like cancer. We developed a new algorithm called ZoomX for analysing barcode-linked sequence reads-these sequences can be traced t...

Journal: :Human molecular genetics 2004
Christine J Shaw James R Lupski

The term 'genomic disorder' refers to a disease that is caused by an alteration of the genome that results in complete loss, gain or disruption of the structural integrity of a dosage sensitive gene(s). In most of the common chromosome deletion/duplication syndromes, the rearranged genomic segments are flanked by large (usually >10 kb), highly homologous low copy repeat (LCR) structures that ca...

2014
Colin Raeside Joël Gaffé Daniel E. Deatherage Olivier Tenaillon Adam M. Briska Ryan N. Ptashkin Stéphane Cruveiller Claudine Médigue Richard E. Lenski Jeffrey E. Barrick Dominique Schneider

UNLABELLED Large-scale rearrangements may be important in evolution because they can alter chromosome organization and gene expression in ways not possible through point mutations. In a long-term evolution experiment, twelve Escherichia coli populations have been propagated in a glucose-limited environment for over 25 years. We used whole-genome mapping (optical mapping) combined with genome se...

Journal: :Molecular Biology and Evolution 2000

Journal: :The Plant cell 2005
Nathalie Chantret Jérôme Salse François Sabot Sadequr Rahman Arnaud Bellec Bastien Laubin Ivan Dubois Carole Dossat Pierre Sourdille Philippe Joudrier Marie-Françoise Gautier Laurence Cattolico Michel Beckert Sébastien Aubourg Jean Weissenbach Michel Caboche Michel Bernard Philippe Leroy Boulos Chalhoub

The Hardness (Ha) locus controls grain hardness in hexaploid wheat (Triticum aestivum) and its relatives (Triticum and Aegilops species) and represents a classical example of a trait whose variation arose from gene loss after polyploidization. In this study, we investigated the molecular basis of the evolutionary events observed at this locus by comparing corresponding sequences of diploid, ter...

Journal: :Seminars in cancer biology 2010
Jian-Min Chen David N Cooper Claude Férec Hildegard Kehrer-Sawatzki George P Patrinos

Genomic rearrangements in inherited disease and cancer involve gross alterations of chromosomes or large chromosomal regions and can take the form of deletions, duplications, insertions, inversions or translocations. The characterization of a considerable number of rearrangement breakpoints has now been accomplished at the nucleotide sequence level, thereby providing an invaluable resource for ...

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