نتایج جستجو برای: l1 retrotransposon

تعداد نتایج: 34435  

2015
Kyle R. Upton Daniel J. Gerhardt J. Samuel Jesuadian Sandra R. Richardson Francisco J. Sánchez-Luque Gabriela O. Bodea Adam D. Ewing Carmen Salvador-Palomeque Marjo S. van der Knaap Paul M. Brennan Adeline Vanderver Geoffrey J. Faulkner

Somatic LINE-1 (L1) retrotransposition during neurogenesis is a potential source of genotypic variation among neurons. As a neurogenic niche, the hippocampus supports pronounced L1 activity. However, the basal parameters and biological impact of L1-driven mosaicism remain unclear. Here, we performed single-cell retrotransposon capture sequencing (RC-seq) on individual human hippocampal neurons ...

Journal: :Human molecular genetics 2010
John L Goodier Prabhat K Mandal Lili Zhang Haig H Kazazian

Despite the immense significance retrotransposons have had for genome evolution much about their biology is unknown, including the processes of forming their ribonucleoprotein (RNP) particles and transporting them about the cell. Suppression of retrotransposon expression, together with the presence of retrotransposon sequence within numerous mRNAs, makes tracking endogenous L1 RNP particles in ...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2014
Alexandre Kuhn Yao Min Ong Ching-Yu Cheng Tien Yin Wong Stephen R Quake William F Burkholder

Insertions of the human-specific subfamily of LINE-1 (L1) retrotransposon are highly polymorphic across individuals and can critically influence the human transcriptome. We hypothesized that L1 insertions could represent genetic variants determining important human phenotypic traits, and performed an integrated analysis of L1 elements and single nucleotide polymorphisms (SNPs) in several human ...

2017
Kota Inoue Kenji Ichiyanagi Kei Fukuda Michael Glinka Hiroyuki Sasaki

Mammalian genomes harbor millions of retrotransposon copies, some of which are transpositionally active. In mouse prospermatogonia, PIWI-interacting small RNAs (piRNAs) combat retrotransposon activity to maintain the genomic integrity. The piRNA system destroys retrotransposon-derived RNAs and guides de novo DNA methylation at some retrotransposon promoters. However, it remains unclear whether ...

2017
Ioannis Papasotiriou Katerina Pantopikou Panagiotis Apostolou

Long interspersed nuclear element 1 (LINE-1 or L1) belongs to the non-long terminal repeat (non-LTR) retrotransposon family, which has been implicated in carcinogenesis and disease progression. Circulating tumor cells (CTCs) are also known to be involved in cancer progression. The present study aimed to compare the L1 expression between circulating tumor cells and non-cancerous samples. Blood s...

Journal: :Nucleic Acids Research 2005
Nuo Yang Lin Zhang Haig H. Kazazian

RNA interference (RNAi) is widely used for functional studies and has been proposed as a potential therapeutic agent. Current RNAi systems are largely efficient, but have limitations including transient effect, the need for viral handling and potential insertional mutations. Here, we describe a simple L1 retrotransposon-based system for the delivery of small interfering RNA (siRNA) and stable s...

2013
Ruchi Shukla Kyle R. Upton Martin Muñoz-Lopez Daniel J. Gerhardt Malcolm E. Fisher Thu Nguyen Paul M. Brennan J. Kenneth Baillie Agnese Collino Serena Ghisletti Shruti Sinha Fabio Iannelli Enrico Radaelli Alexandre Dos Santos Delphine Rapoud Catherine Guettier Didier Samuel Gioacchino Natoli Piero Carninci Francesca D. Ciccarelli Jose Luis Garcia-Perez Jamila Faivre Geoffrey J. Faulkner

LINE-1 (L1) retrotransposons are mobile genetic elements comprising ~17% of the human genome. New L1 insertions can profoundly alter gene function and cause disease, though their significance in cancer remains unclear. Here, we applied enhanced retrotransposon capture sequencing (RC-seq) to 19 hepatocellular carcinoma (HCC) genomes and elucidated two archetypal L1-mediated mechanisms enabling t...

2013
Olga Piskareva Christina Ernst Niamh Higgins Vadim Schmatchenko

The human LINE-1/L1 ORF2 protein is a multifunctional enzyme which plays a vital role in the life cycle of the human L1 retrotransposon. The protein consists of an endonuclease domain, followed by a central reverse transcriptase domain and a carboxy-terminal C-domain with unknown function. Here, we explore the nucleic acid binding properties of the 180-amino acid carboxy-terminal segment (CTS) ...

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