نتایج جستجو برای: hydration bonds

تعداد نتایج: 65112  

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2017
Joze Grdadolnik Franci Merzel Franc Avbelj

Hydrophobicity plays an important role in numerous physicochemical processes from the process of dissolution in water to protein folding, but its origin at the fundamental level is still unclear. The classical view of hydrophobic hydration is that, in the presence of a hydrophobic solute, water forms transient microscopic "icebergs" arising from strengthened water hydrogen bonding, but there is...

Journal: :Journal of biological physics 2012
Valentino Bianco Svilen Iskrov Giancarlo Franzese

The mechanisms of cold and pressure denaturation of proteins are a matter of debate, but it is commonly accepted that water plays a fundamental role in the process. It has been proposed that the denaturation process is related to an increase of hydrogen bonds among hydration water molecules. Other theories suggest that the causes of denaturation are the density fluctuations of surface water, or...

2016
Carles Calero H. Eugene Stanley Giancarlo Franzese

Hydration water determines the stability and function of phospholipid membranes as well as the interaction of membranes with other molecules. Experiments and simulations have shown that water dynamics slows down dramatically as the hydration decreases, suggesting that the interfacial water that dominates the average dynamics at low hydration is slower than water away from the membrane. Here, ba...

Journal: :Accounts of chemical research 2012
Knut R Asmis Daniel M Neumark

Conjugate-base anions are ubiquitous in aqueous solution. Understanding the hydration of these anions at the molecular level represents a long-standing goal in chemistry. A molecular-level perspective on ion hydration is also important for understanding the surface speciation and reactivity of aerosols, which are a central component of atmospheric and oceanic chemical cycles. In this Account, a...

Journal: :The Journal of chemical physics 2011
Olivier Collet

First shells of hydration and bulk solvent play a crucial role in the folding of proteins. Here, the role of water in the dynamics of proteins has been investigated using a theoretical protein-solvent model and a statistical physics approach. We formulate a hydration model where the hydrogen bonds between water molecules pertaining to the first shell of the protein conformation may be either ma...

2013
Jyoti Roy Choudhuri Vivek K. Yadav Anwesa Karmakar Bhabani S. Mallik Amalendu Chandra

We present a first-principles simulation study of vibrational spectral diffusion and hy drogen-bond dynamics in solution of a fluoride ion in deuterated water. The present calculations are based on ab initio molecular dynamics simulation for trajectory genera tion and wavelet analysis for calculations of frequency fluctuations. The O–D bonds of deuterated water in the anion hydration shell are ...

Journal: :Nucleic acids research 1996
M R Conte G L Conn T Brown A N Lane

The so-called spine of hydration in the minor groove of AnTn tracts in DNA is thought to stabilise the structure, and kinetically bound water detected in the minor groove of such DNA species by NMR has been attributed to a narrow minor groove [Liepinsh, E., Leupin, W. and Otting, G. (1994) Nucleic Acids Res. 22, 2249-2254]. We report here an NMR study of hydration of an RNA dodecamer which has ...

2015
Lada Biedermannová Bohdan Schneider

Crystallography provides unique information about the arrangement of water molecules near protein surfaces. Using a nonredundant set of 2818 protein crystal structures with a resolution of better than 1.8 Å, the extent and structure of the hydration shell of all 20 standard amino-acid residues were analyzed as function of the residue conformation, secondary structure and solvent accessibility. ...

Journal: :Construction and Building Materials 2022

This study investigates the hydration behavior and phase evolution of portland cement composites containing montmorillonite (MT) with an objective to address poor dispersion improve physical features chemical reactivity MT through functionalization a non-ionic surfactant (polyethylene glycol ether). After functionalization, exhibited enlarged layer spacing (122%), organic bonds intercalated, im...

Journal: :The journal of physical chemistry. A 2007
Omer Markovitch Noam Agmon

Proton solvation and proton mobility are both subjects of great interest in chemistry and biology. Here we have studied the hydration shells of H3O+ at temperatures ranging from 260 to 340 K using the multistate empirical valence-bond methodology (MS-EVB2). We have calculated the radial distribution functions for the protonium and its solvation shells. Furthermore, we have determined the Gibbs ...

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