نتایج جستجو برای: h2az

تعداد نتایج: 61  

Journal: :The Plant cell 2010
Richard B Meagher

The epitype of a single gene or entire genome is determined by cis-linked differences in chromatin structure. I explore the hypothesis that "epitype and associated phenotypes evolve by gene duplication, divergence, and subfunctionalization" parallel to models for the evolution of genotype. This hypothesis is dissected by considering the relationship between epigenetic control and phenotype, the...

2017
Tomasz Dzida Mudassar Iqbal Iryna Charapitsa George Reid Henk Stunnenberg Filomena Matarese Korbinian Grote Antti Honkela Magnus Rattray

We have developed a machine learning approach to predict stimulation-dependent enhancer-promoter interactions using evidence from changes in genomic protein occupancy over time. The occupancy of estrogen receptor alpha (ERα), RNA polymerase (Pol II) and histone marks H2AZ and H3K4me3 were measured over time using ChIP-Seq experiments in MCF7 cells stimulated with estrogen. A Bayesian classifier...

2014
Daniel J O'Neill Stuart Charles Williamson Dhuha Alkharaif Isabella Christina Mazzaro Monteiro Marilyn Goudreault Luke Gaughan Craig N Robson Anne-Claude Gingras Olivier Binda

The lysine methyltransferase SETD6 modifies the histone variant H2AZ, a key component of nuclear receptor-dependent transcription. Herein, we report the identification of several factors that associate with SETD6 and are implicated in nuclear hormone receptor signaling. Specifically, SETD6 associates with the estrogen receptor α (ERα), histone deacetylase HDAC1, metastasis protein MTA2, and the...

Journal: :Cell 2007
Gaku Mizuguchi Hua Xiao Jan Wisniewski M. Mitchell Smith Carl Wu

The budding yeast histone H3 variant, Cse4, replaces conventional histone H3 in centromeric chromatin and, together with centromere-specific DNA-binding factors, directs assembly of the kinetochore, a multiprotein complex mediating chromosome segregation. We have identified Scm3, a nonhistone protein that colocalizes with Cse4 and is required for its centromeric association. Bacterially express...

2017
Inês J de Castro James Budzak Maria L Di Giacinto Lorena Ligammari Ezgi Gokhan Christos Spanos Daniela Moralli Christine Richardson Jose I de Las Heras Silvia Salatino Eric C Schirmer Katharine S Ullman Wendy A Bickmore Catherine Green Juri Rappsilber Sarah Lamble Martin W Goldberg Veronica Vinciotti Paola Vagnarelli

Repo-Man is a protein phosphatase 1 (PP1) targeting subunit that regulates mitotic progression and chromatin remodelling. After mitosis, Repo-Man/PP1 remains associated with chromatin but its function in interphase is not known. Here we show that Repo-Man, via Nup153, is enriched on condensed chromatin at the nuclear periphery and at the edge of the nucleopore basket. Repo-Man/PP1 regulates the...

2015
Hanan E Alatwi Jessica A Downs

The mammalian INO80 remodelling complex facilitates homologous recombination (HR), but the mechanism by which it does this is unclear. Budding yeast INO80 can remove H2A.Z/H2B dimers from chromatin and replace them with H2A/H2B dimers. H2A.Z is actively incorporated at sites of damage in mammalian cells, raising the possibility that H2A.Z may need to be subsequently removed for resolution of re...

Journal: :Genome research 2013
Muhammad Shoaib Arman Kulyyassov Chloé Robin Kinga Winczura Pavel Tarlykov Emmanuelle Despas Patricia Kannouche Erlan Ramanculov Marc Lipinski Vasily Ogryzko

We have developed an approach termed PUB-NChIP (proximity utilizing biotinylation with native ChIP) to purify and study the protein composition of chromatin in proximity to a nuclear protein of interest. It is based on coexpression of (1) a protein of interest, fused with the bacterial biotin ligase BirA, together with (2) a histone fused to a biotin acceptor peptide (BAP), which is specificall...

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