نتایج جستجو برای: genomic linkage

تعداد نتایج: 165247  

Journal: :IEEE/ACM Transactions on Computational Biology and Bioinformatics 2019

2016
Marte Sodeland Per Erik Jorde Sigbjørn Lien Sissel Jentoft Paul R. Berg Harald Grove Matthew P. Kent Mariann Arnyasi Esben Moland Olsen Halvor Knutsen

In several species genetic differentiation across environmental gradients or between geographically separate populations has been reported to center at "genomic islands of divergence," resulting in heterogeneous differentiation patterns across genomes. Here, genomic regions of elevated divergence were observed on three chromosomes of the highly mobile fish Atlantic cod (Gadus morhua) within geo...

Journal: :The plant genome 2017
Yuanwen Guo Yanqi Wu Jeff A Anderson Justin Q Moss Lan Zhu Jinmin Fu

Common bermudagrass has been widely used as a major warm-season turf, forage, and soil stabilization grass in the southern United States. However, codominant marker development, linkage, and quantitative trait loci (QTL) mapping resources are limited in the important taxon. Accordingly, the objectives of this study were to develop simple sequence repeat (SSR) markers, construct a genetic map, a...

The objective of this study was to investigate the role of genetic relationships between training and validation set with considering different ratio of phenotypic records of training set on accuracy of genomic prediction via animal models containing genotype × environment interactions in simulated imputation data. For this purpose, four different scenarios using 15k density containing differen...

2015
Magali Naville Minaka Ishibashi Marco Ferg Hemant Bengani Silke Rinkwitz Monika Krecsmarik Thomas A Hawkins Stephen W Wilson Elizabeth Manning Chandra S R Chilamakuri David I Wilson Alexandra Louis F Lucy Raymond Sepand Rastegar Uwe Strähle Boris Lenhard Laure Bally-Cuif Veronica van Heyningen David R FitzPatrick Thomas S Becker Hugues Roest Crollius

Enhancers can regulate the transcription of genes over long genomic distances. This is thought to lead to selection against genomic rearrangements within such regions that may disrupt this functional linkage. Here we test this concept experimentally using the human X chromosome. We describe a scoring method to identify evolutionary maintenance of linkage between conserved noncoding elements and...

2017
Marta Niedzicka Katarzyna Dudek Anna Fijarczyk Piotr Zieliński Wiesław Babik

Linkage maps are widely used to investigate structure, function, and evolution of genomes. In speciation research, maps facilitate the study of the genetic architecture of reproductive isolation by allowing identification of genomic regions underlying reduced fitness of hybrids. Here we present a linkage map for European newts of the Lissotriton vulgaris species complex, constructed using two f...

Journal: :Genetic epidemiology 2007
Tiffany A Greenwood Ondrej Libiger Sharon Kardia Craig Hanis Alanna C Morrison C Charles Gu Treva Rice Michael Miller Stephen T Turner Richard H Myers John Grove Chin-Fu Hsiao Alan B Weder Nicholas J Schork

Linkage analyses of complex, multifactorial traits and diseases, such as essential hypertension, have been difficult to interpret and reconcile. Many published studies provide evidence suggesting that different genes and genomic regions influence hypertension, but knowing which of these studies reflect true positive results is challenging. The reasons for this include the diversity of analytica...

Journal: :Human molecular genetics 2003
Michael A Hauser Yi-Ju Li Satoshi Takeuchi Robert Walters Maher Noureddine Melinda Maready Tiffany Darden Christine Hulette Eden Martin Elizabeth Hauser Hong Xu Don Schmechel Judith E Stenger Fred Dietrich Jeffery Vance

We present a multifactorial, multistep approach called genomic convergence that combines gene expression with genomic linkage analysis to identify and prioritize candidate susceptibility genes for Parkinson's disease (PD). To initiate this process, we used serial analysis of gene expression (SAGE) to identify genes expressed in two normal substantia nigras (SN) and adjacent midbrain tissue. Thi...

2010
Hee Shin Kim Terence Murphy Jing Xia Doina Caragea Yoonseong Park Richard W. Beeman Marcé D. Lorenzen Stephen Butcher J. Robert Manak Susan J. Brown

BeetleBase (http://www.beetlebase.org) has been updated to provide more comprehensive genomic information for the red flour beetle Tribolium castaneum. The database contains genomic sequence scaffolds mapped to 10 linkage groups (genome assembly release Tcas_3.0), genetic linkage maps, the official gene set, Reference Sequences from NCBI (RefSeq), predicted gene models, ESTs and whole-genome ti...

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