نتایج جستجو برای: embedded ffpe

تعداد نتایج: 109988  

2014
Maurizio Callari Antonio Lembo Giampaolo Bianchini Valeria Musella Vera Cappelletti Luca Gianni Maria Grazia Daidone Paolo Provero

Formalin fixed paraffin-embedded (FFPE) tumor specimens are the conventionally archived material in clinical practice, representing an invaluable tissue source for biomarkers development, validation and routine implementation. For many prospective clinical trials, this material has been collected allowing for a prospective-retrospective study design which represents a successful strategy to def...

2015
L. S.

Equine aural plaques were recently associated with four equine papillomaviruses (EcPVs) (Lange et al., 2013; Taniwaki et al., 2013). These viruses have been detected in fresh samples by PCR (Lange et al. 2013; Taniwaki et al., 2013), but EcPVs have not been identified in formalinfixed and paraffin-embedded (FFPE) aural plaque samples. Archives of FFPE aural plaques and other papilloma specimens...

Journal: :Cancer research 2015
Sarah R Greytak Kelly B Engel B Paige Bass Helen M Moore

Formalin-fixed and paraffin-embedded (FFPE) tissue biospecimens are a valuable resource for molecular cancer research. Although much can be gained from their use, it remains unclear whether the genomic and expression profiles obtained from FFPE biospecimens accurately reflect the physiologic condition of the patient from which they were procured, or if such profiles are confounded by biologic e...

Journal: :JOP : Journal of the pancreas 2013
Joao A Paulo Vivek Kadiyala Scott Brizard Peter A Banks Hanno Steen Darwin L Conwell

CONTEXT Formalin-fixed paraffin-embedded (FFPE) tissue is a standard for specimen preservation, and as such FFPE tissue banks are an untapped resource of histologically-characterized specimens for retrospective biomarker investigation for pancreatic disease. OBJECTIVES We use liquid chromatography coupled with tandem mass spectrometry (LC-MS/MS) to compare FFPE specimens from three different ...

Journal: :Folia histochemica et cytobiologica 2010
Kamal Morshed Małgorzata Polz-Dacewicz Marcin Szymański Agata Smoleń

The use of formalin-fixed paraffin-embedded (FFPE) tissues for HPV DNA detection by PCR from biopsy materials is not entirely clear in retrospective studies. The aim of our study was to evaluate the usefulness and efficiency of FFPE tissues from laryngeal cancer (LSCC) in HPV detection by immunohistochemistry reaction (IHC) and PCR-DNA enzyme immunoassay method (PCR/DEIA) and to compare with HP...

2012
John D. Morlan Kunbin Qu Dominick V. Sinicropi

We report a method for Selective Depletion of abundant RNA (SDRNA) species from Human total RNA isolated from formalin-fixed, paraffin-embedded (FFPE) tissue, here demonstrating removal of ribosomal and mitochondrial transcripts from clinical FFPE tissue RNA archived up to 20 years. Importantly, SDRNA removes 98% of targeted RNAs while preserving relative abundance profiles of non-targeted RNAs...

2014
Hui Kong Mengou Zhu Fengyun Cui Shuyang Wang Xue Gao Shaohua Lu Ying Wu Hongguang Zhu

Formalin-fixed paraffin-embedded (FFPE) tissues are important resources for molecular medical research. However, long-chain RNA analysis is restricted in FFPE tissues due to high levels of degradation. To explore the possibility of long RNA quantification in FFPE tissues, we selected 14 target RNAs (8 mRNAs and 6 long noncoding RNAs) from literatures, and designed short (~60 bp) and long (~200 ...

Journal: :American journal of clinical pathology 2013
Howard H Wu Kelly J Jones Harvey M Cramer

Immunocytochemistry (ICC) performed on the cell-transferred cytologic smears (CTCS) of fine-needle aspiration (FNA) is useful when the cell blocks lack adequate material. The comparison of the ICC results from the CTCS of FNA with the corresponding formalin-fixed paraffin-embedded tissue (FFPE) has not been reported previously. We applied 12 commonly used ICC antibodies on 160 pieces of ethanol...

2012
Tara Holley Elizabeth Lenkiewicz Lisa Evers Waibhav Tembe Christian Ruiz Joel R. Gsponer Cyrill A. Rentsch Lukas Bubendorf Mark Stapleton Doug Amorese Christophe Legendre Heather E. Cunliffe Ann E. McCullough Barbara Pockaj David Craig John Carpten Daniel Von Hoff Christine Iacobuzio-Donahue Michael T. Barrett

Formalin fixed paraffin embedded (FFPE) tissues are a vast resource of annotated clinical samples. As such, they represent highly desirable and informative materials for the application of high definition genomics for improved patient management and to advance the development of personalized therapeutics. However, a limitation of FFPE tissues is the variable quality of DNA extracted for analyse...

2014
Kensuke Kojima Craig April Claudia Canasto-Chibuque Xintong Chen Manjeet Deshmukh Anu Venkatesh Poh Seng Tan Masahiro Kobayashi Hiromitsu Kumada Jian-Bing Fan Yujin Hoshida

BACKGROUND Archived tissues from previously completed prospective trials represent invaluable resource for biomarker development. However, such specimens are often stored as sections on glass slides, in which RNA is severely degraded due to prolonged air exposure. We evaluated whether a proportion of archived sectioned formalin-fixed paraffin-embedded (AS-FFPE) tissues yield transcriptome profi...

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