نتایج جستجو برای: dependent rna polymerase rdrp

تعداد نتایج: 980160  

Journal: :Nature Communications 2021

Abstract Remdesivir is the only FDA-approved drug for treatment of COVID-19 patients. The active form remdesivir acts as a nucleoside analog and inhibits RNA-dependent RNA polymerase (RdRp) coronaviruses including SARS-CoV-2. incorporated by RdRp into growing product allows addition three more nucleotides before synthesis stalls. Here we use synthetic chemistry, biochemistry cryo-electron micro...

Journal: :Journal of virology 2006
Toba A M Osman Robert H A Coutts Kenneth W Buck

Cereal yellow dwarf virus (CYDV) RNA has a 5'-terminal genome-linked protein (VPg). We have expressed the VPg region of the CYDV genome in bacteria and used the purified protein (bVPg) to raise an antiserum which was able to detect free VPg in extracts of CYDV-infected oat plants. A template-dependent RNA-dependent RNA polymerase (RdRp) has been produced from a CYDV membrane-bound RNA polymeras...

Journal: :The Plant cell 1998
W Schiebel T Pélissier L Riedel S Thalmeir R Schiebel D Kempe F Lottspeich H L Sänger M Wassenegger

A 3600-bp RNA-directed RNA polymerase (RdRP)-specific cDNA comprising an open reading frame (ORF) of 1114 amino acids was isolated from tomato. The putative protein encoded by this ORF does not share homology with any characterized proteins. Antibodies that were raised against synthetic peptides whose sequences have been deduced from the ORF were shown to specifically detect the 127-kD tomato R...

2014
Abdelhakim Ahmed-Belkacem Jean-François Guichou Rozenn Brillet Nazim Ahnou Eva Hernandez Coralie Pallier Jean-Michel Pawlotsky

The hepatitis C virus (HCV) RNA-dependent RNA polymerase (RdRp) is a key target for antiviral intervention. The goal of this study was to identify the binding site and unravel the molecular mechanism by which natural flavonoids efficiently inhibit HCV RdRp. Screening identified the flavonol quercetagetin as the most potent inhibitor of HCV RdRp activity. Quercetagetin was found to inhibit RdRp ...

2017
Ona Barauskas Weimei Xing Esmeralda Aguayo Madeleine Willkom Annapurna Sapre Michael Clarke Gabriel Birkus Brian E Schultz Roman Sakowicz HyockJoo Kwon Joy Y Feng

Influenza polymerase is a heterotrimer protein with both endonuclease and RNA-dependent RNA polymerase (RdRp) activity. It plays a critical role in viral RNA replication and transcription and has been targeted for antiviral drug development. In this study, we characterized the activity of recombinant RdRp purified at 1:1:1 ratio in both ApG-primed RNA replication and mRNA-initiated RNA transcri...

Journal: :Bioinformatics and Biology Insights 2021

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) worldwide has increased the importance of computational tools to design a drug or vaccine in reduced time with minimum risk. Earlier studies have emphasized important role RNA-dependent RNA polymerase (RdRp) SARS-CoV-2 replication as potential target. In our study, comprehensive approaches were applied identify compounds targeting RdR...

2013
Dimitrios Vlachakis Dimitrios-Georgios Kontopoulos Sophia Kossida

Protein structure is more conserved than sequence in nature. In this direction we developed a novel methodology that significantly improves conventional homology modelling when sequence identity is low, by taking into consideration 3D structural features of the template, such as size and shape. Herein, our new homology modelling approach was applied to the homology modelling of the RNA-dependen...

2012
Aartjan J.W. te Velthuis Sjoerd H. E. van den Worm Eric J. Snijder

Uniquely among RNA viruses, replication of the ~30-kb SARS-coronavirus genome is believed to involve two RNA-dependent RNA polymerase (RdRp) activities. The first is primer-dependent and associated with the 106-kDa non-structural protein 12 (nsp12), whereas the second is catalysed by the 22-kDa nsp8. This latter enzyme is capable of de novo initiation and has been proposed to operate as a prima...

Background: RNA interference (RNAi) is a phenomenon uses double-stranded RNA (dsRNA) to specifically inhibit gene expression. The non-specific silencing caused by interferon response to dsRNA in mammalian cells limits the potential of utilizing RNAi to study gene function. Duplexes of 21-nucleotide short interfering dsRNA (siRNA) inhibit gene expression by RNAi. In some organisms, siRNA can als...

2013
Guoliang Lu Peng Gong

The flavivirus NS5 harbors a methyltransferase (MTase) in its N-terminal ≈ 265 residues and an RNA-dependent RNA polymerase (RdRP) within the C-terminal part. One of the major interests and challenges in NS5 is to understand the interplay between RdRP and MTase as a unique natural fusion protein in viral genome replication and cap formation. Here, we report the first crystal structure of the fu...

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