The formation of local denaturation zones (bubbles) in double-stranded DNA is an important example for conformational changes of biological macromolecules. We study the dynamics of bubble formation in terms of a Fokker-Planck equation for the probability density to find a bubble of size n base pairs at time t, on the basis of the free energy in the Poland-Scheraga model. Characteristic bubble c...

In order to investigate a single vacuum bubble collapse near the free surface and the rigid boundary, the moving particle simulation (MPS) method has been used. Liquid and gas phase were defined by the moving particles and bobble shape was determined by the position of interface particle. The calculation was performed with four parameters; bubble radius, distances from free surface or rigid bou...

Mechanisms and dynamics of bubble coalescence in silicic magmas 1 Jonathan M. Castro (University of Mainz) 2 Alain Burgisser (ISTO-CNRS) 3 Ian Schipper (ISTO-CNRS) 4 Simona Mancini (ISTO-Université d’Orléans) 5 6 Abstract 7 Bubble coalescence is an important process that strongly affects magmatic degassing. 8 Without coalescence, bubbles remain isolated from one another in the melt, severely 9 ...

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The dynamics of cavitation bubbles on water is investigated for bubbles produced optically and acoustically. Single bubble dynamics is studied with laser produced bubbles and high speed photography with framing rates up to 20.8 million frames per second. Examples for jet formation and shock wave emission are given. Acoustic cavitation is produced in water in the interior of piezoelectric cylind...

We study experimentally the dynamics of laser-induced cavitation bubbles created inside a narrow gap. The gap height, h , is varied from 15 to 400 microm and the resulting bubble dynamics is compared to a semiunbounded fluid. The cavitation bubbles are created with pulsed laser light at constant laser energy and are imaged with a high-speed camera. The bubble lifetime increases with decreasing ...

We implement a semi-analytic scheme for numerically computing high order polynomial approximations of the stable and unstable manifolds associated with the fixed points of the normal form for the family of quadratic volume-preserving diffeomorphisms with quadratic inverse. We use this numerical scheme to study some hyperbolic dynamics associated with an invariant structure called a vortex-bubbl...

The growth of bubbles within the body is widely believed to be the cause of decompression sickness (DCS). Dive computer algorithms that aim to prevent DCS by mathematically modelling bubble dynamics and tissue gas kinetics are challenging to validate. This is due to lack of understanding regarding the mechanism(s) leading from bubble formation to DCS. In this work, a biomimetic in vitro tissue ...

Cavitation and bubble dynamics have a wide range of practical applications in a range of disciplines, including hydraulic, mechanical and naval engineering, oil exploration, clinical medicine and sonochemistry. However, this paper focuses on how a fundamental concept, the Kelvin impulse, can provide practical insights into engineering and industrial design problems. The pathway is provided thro...