There are several downstream analysis goals for which RNA-seq is well suited. Main categories of these are described briefly below with reference to supporting materials. Refer to S2 Table for specific tools relevant to many of these areas. For each application, a basic data recommendation is provided. It is important to remember that these are simply examples. In addition to the varying demand...

Table 1. Technology parameters for CAZM 0:5m CMOS drivers 18]. Table 2. Technology parameters based on (a) MCM10 technology 5] and (b) CAZM 0:5m CMOS model 18]. Table 3. Average signal delay (ns) for (a) 1-critical-sink net and (b) multi-critical-sinks net under the MCM10 technology. Table 4. Average signal delay (ns) for (a) 1-critical-sink net and (b) multi-critical-sinks net under the CAZM 0...

All tools used in the online tutorial (www.rnaseq.wiki) are referenced below (in bold) along with alternative tools in each category. Where possible a citation is provided. Links are also provided to help the user evaluate the code and the level of maintenance. Where possible the link goes directly to a source controlled repository such as a git repo. Additional lists of tools can be found here...

0