Multicopy genes, like ribosomal RNA genes (rDNA), are widely used to describe and distinguish individuals. Despite concerted evolution that homogenizes a large number of rDNA gene copies, the presence of different gene variants within a genome has been reported. Characterization of an organism by defining every single variant of tens to thousands of rDNA repeat units present in a eukaryotic gen...

PURPOSE Mutations in the epidermal growth factor receptor (EGFR) are associated with clinical and radiographic responses to EGFR tyrosine kinase inhibitors gefitinib and erlotinib. Currently available methods of EGFR mutation detection rely on direct DNA sequencing, which requires isolation of DNA from a relatively pure population of tumor cells, cannot be done on small diagnostic specimens, an...

BACKGROUND It has been reported that several baseline polymorphisms of direct-acting antivirals (DAAs) agents resistance-associated variants (RAVs) would affect the treatment outcomes of patients chronically infected with hepatitis C virus (CHC). The aim of this study is to investigate the prevalence of DAAs RAVs in treatment-naÏve GT1b CHC patients. METHODS Direct sequencing and ultra-deep s...

30 milled rice samples were collected from retailers in four states of malaysia. these samples were evaluated for eurotium spp. contaminations by direct plating on malt extract salt agar (mesa). all eurotium were isolated and identified based on morphology and nucleotide sequences of internal transcribed spacer 1 (its1) and its2 of the rdna. four eurotium species (e. rubrum, e. amstelodami, e. ...

as a case study, the genotypic polymorphism of the iranian material of diploid triticum was screened based on internal transcribed spacer 2 (its2) of the ribosomal dna (rdna) using single strand conformation polymorphism (sscp) analysis. this is a simple and cost effective technique for genotyping and investigating the allelic polymorphism among plant populations. performing sscp analysis among...

background: mucopolysaccharidosis type-vi (mps-vi), which is inherited as an autosomal recessive trait, results from the deficiency of n-acetylgalactosamine 4-sulfatase (arylsulfatase b) activity and the lysosomal accumulation of dermatan sulfate. in this study, arsb mutation analysis was performed on three unrelated patients who were originally from the west azerbaijan province of iran. method...

Duchenne Muscular dystrophy (DMD) is an X-linked recessive disorder caused by mutations in the dystrophin gene, which is located in Xp21. The majority of the identified mutations are large deletions and duplications, and gene dosage assays were developed for quantitative genomic screening of copy number variations. However, remaining 25% of the DMD are due to point mutations and require direct ...

Direct colony sequencing of plasmid DNA is a powerful technique. Radioactive or fluorescent dye primer methods are the reported direct colony sequencing methods (2–4,6). Recently, dye terminator sequencing chemistry (7) has been improved by the introduction of a modified enzyme, AmpliTaq DNA polymerase FS (8), as well as a new d-Rhodamine and BigDye terminator (PE Biosystems, Foster City, CA,...

The paper introduces an architecture for a direct digital synthesizer based on algorithmic direct amplitude generation. The circuit implementing the algorithm has a gate count proportional to digital precision length and in its simplest form includes one compare, one addition and several increments per iteration step. A phase compensation method is described to eliminate the nonuniformity in ti...