نتایج جستجو برای: spoligotyping

تعداد نتایج: 649  

2016
Hassan Ravansalar Keyvan Tadayon3 Kiarash Ghazvini

BACKGROUND AND OBJECTIVES Molecular typing methods are important and useful tools to assess the transmission, diversity of strains and differentiation between new infections and relapses which can effectively help in controlling infections. The aim of this study was to evaluate the molecular typing methods which have been used in Iran. By evaluating the results and discriminatory power of each ...

2011
Edgar Abadia Jian Zhang Viviana Ritacco Kristin Kremer Raymond Ruimy Leen Rigouts Harrison Magdinier Gomes Atiná Ribeiro Elias Maryse Fauville-Dufaux Karolien Stoffels Voahangy Rasolofo-Razanamparany Darío Garcia de Viedma Marta Herranz Sahal Al-Hajoj Nalin Rastogi Carlo Garzelli Enrico Tortoli Philip N Suffys Dick van Soolingen Guislaine Refrégier Christophe Sola

BACKGROUND The classical spoligotyping technique, relying on membrane reverse line-blot hybridization of the spacers of the Mycobacterium tuberculosis CRISPR locus, is used world-wide (598 references in Pubmed on April 8th, 2011). However, until now no inter-laboratory quality control study had been undertaken to validate this technique. We analyzed the quality of membrane-based spoligotyping b...

2017
C N'Dira Sanoussi Dissou Affolabi Leen Rigouts Séverin Anagonou Bouke de Jong

BACKGROUND This study aimed to compare the prevalence of Mycobacterium tuberculosis complex (MTBc) lineages between direct genotyping (on sputum) and indirect genotyping (on culture), to characterize potential culture bias against difficult growers. METHODOLOGY/PRINCIPAL FINDINGS Smear-positive sputa from consecutive new tuberculosis patients diagnosed in Cotonou, (Benin) were included, befor...

Journal: :Journal of clinical microbiology 2004
Lauren S Cowan Lois Diem Mary Catherine Brake Jack T Crawford

Spoligotyping using Luminex technology was shown to be a highly reproducible method suitable for high-throughput analysis. Spoligotyping of 48 isolates using the traditional membrane-based assay and the Luminex assay yielded concordant results for all isolates. The Luminex platform provides greater flexibility and cost effectiveness than the membrane-based assay.

Journal: :Journal of clinical microbiology 2009
M Beatrice Boniotti Maria Goria Daniela Loda Annalisa Garrone Alessandro Benedetto Alessandra Mondo Ernesto Tisato Mariagrazia Zanoni Simona Zoppi Alessandro Dondo Silvia Tagliabue Stefano Bonora Giorgio Zanardi M Lodovica Pacciarini

Spoligotyping and exact tandem repeat (ETR) analysis of Mycobacterium bovis and M. caprae isolated strains has been routinely carried out in Italy since 2000 to obtain a database of genetic profiles and support traditional epidemiological investigations. In this study, we characterized 1,503 M. bovis and 57 M. caprae isolates obtained from 2000 to 2006 in 747 cattle herds mainly located in nort...

2011
Jian Zhang Seiha Heng Stéphanie Le Moullec Guislaine Refregier Brigitte Gicquel Christophe Sola Bertrand Guillard

BACKGROUND Cambodia is among the 22 high-burden TB countries, and has one of the highest rates of TB in South-East Asia. This study aimed to describe the genetic diversity among clinical Mycobacterium tuberculosis complex (MTC) isolates collected in Cambodia and to relate these findings to genetic diversity data from neighboring countries. METHODS We characterized by 24 VNTR loci genotyping a...

2011
Qiao Liu Dandan Yang Weiguo Xu Jianming Wang Bing LV Yan Shao Honghuan Song Guoli Li Haiyan Dong Kanglin Wan Hua Wang

BACKGROUND Globally, China is the second place with high burden of tuberculosis (TB). To explore the characteristics of the pathogens of Mycobacterium tuberculosis (MTB) circulating in this area is helpful for understanding and controlling the spread of the strains. Recent developments in molecular biology have allowed prompt identification and tracking specific strains of MTB spreading through...

2010
Mehdi Jafarian Muayed Aghali-Merza Parissa Farnia Mojtaba Ahmadi Mohammad Reza Masjedi Ali Akbar Velayati

Molecular epidemiology analyses are frequently used in determining epidemiology of tuberculosis. Recently, Mycobacterial Interspersed Repetitive Unit Variable Number Tandem Repeat (MIRU-VNTR) and Spoligotyping has become an important method, as it allows high-through put, discriminatory and reproducible analysis of clinical isolate. The purpose of this study is to compare techniques of "MIRU-VN...

Journal: :iranian journal of microbiology 0
mohadese mozafari mycobacteriology research center, national research institute of tuberculosis and lung diseases (nritld), shahid beheshti university of medical sciences, tehran, iran. parissa farnia mycobacteriology research center, national research institute of tuberculosis and lung diseases (nritld), shahid beheshti university of medical sciences, tehran, iran. mona afraei mycobacteriology research center, national research institute of tuberculosis and lung diseases (nritld), shahid beheshti university of medical sciences, tehran, iran. zahra derakhshani-nezhad mycobacteriology research center, national research institute of tuberculosis and lung diseases (nritld), shahid beheshti university of medical sciences, tehran, iran. mohammad reza masjedi mycobacteriology research center, national research institute of tuberculosis and lung diseases (nritld), shahid beheshti university of medical sciences, tehran, iran. ali akbar velayati mycobacteriology research center, national research institute of tuberculosis and lung diseases (nritld), shahid beheshti university of medical sciences, tehran, iran.

background and objectives: molecular epidemiology tools are widely used in determining epidemiology of tuberculosis. spoligotyping is a molecular epidemiology method that is used for characterization and typing of mycobacterium tuberculosis complex strains. the method is based on polymorphism of the chromosomal dr locus consisting of identical 36-bp drs alternating with 35-41 unique spacers. th...

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