We used EPR spectroscopy to probe directly the interaction between phospholamban (PLB) and its regulatory target, the sarcoplasmic reticulum Ca-ATPase (SERCA). Synthetic monomeric PLB was prepared with a single cytoplasmic cysteine at residue 11, which was then spin labeled. PLB was reconstituted into membranes in the presence or absence of SERCA, and spin label mobility and accessibility were ...

‎let $g$ be a graph with vertex set $v(g)$ and edge set $x(g)$ and consider the set $a={0,1}$‎. ‎a mapping $l:v(g)longrightarrow a$ is called binary vertex labeling of $g$ and $l(v)$ is called the label of the vertex $v$ under $l$‎. ‎in this paper we introduce a new kind of graph energy for the binary labeled graph‎, ‎the labeled graph energy $e_{l}(g)$‎. ‎it depends on the underlying graph $g$...

Spin label 1,14 studies on DPPC membranes revealed an increased rigidity of the membrane with increasing spin label concentrations. This causes a retardation in permea­ tion rate of Na-ascorbate. At temperatures > 40 °C, that is above the phase transition temperature, the ESR spectrum of a spin labelled DPPC membrane is very similar to a free spin label spectrum and yet the permeation rate of N...

Pulsed electron electron double resonance experiments with rigid spin labels can reveal very detailed information about the structure and conformational flexibility of nucleic acid molecules. On the other hand, the analysis of such data is more involved the distance and orientation information encoded in the time domain data need to be extracted and separated. In this respect studies with diffe...

Site-directed spin-labeling and electron paramagnetic resonance are powerful tools for studying structure and conformational dynamics of proteins, especially in membranes. The position of the spin label is used as an indicator of the position of the site to which it is attached. The interpretation of these experiments is based on the assumptions that the spin label does not affect the peptide c...

Electron Paramagnetic Resonance (EPR) spectroscopy, also known as Electron Spin Resonance(ESR) especially among physicists, is a strong and versatile spectroscopic method forinvestigation of paramagnetic systems, i.e. systems like free radicals and most transition metalions, which have unpaired electrons. The sensitivity and selectivity of EPR are notable andintriguing as compared to other spec...

In order to efficiently simulate spin label behavior when attached to the protein backbone we developed a novel approach that enhances local conformational sampling. The simulated scaling (SS) approach (Li, H., et al. J. Chem. Phys. 2007, 126, 24106) couples the random walk of a potential scaling parameter and molecular dynamics in the framework of hybrid Monte Carlo. This approach allows effic...

The applicability of a new steroidal spin label, 3-oxo-androstan-17 beta-yl-(2",2",6",6"-tetramethyl-N-oxyl) piperidyl butan-1',4'-dioate, in studying the phase transition properties of model membrane L-alpha-dipalmitoyl phosphatidyl choline (DPPC) in the presence and absence of drugs has been explored. Its synthesis and characterization has been described herein. Besides, the localization of t...