In many phylogenetic problems, assuming that species have evolved from a common ancestor by a simple branching process is unrealistic. Reticulate phylogenetic models, however, have been largely neglected because the concept of reticulate evolution have not been supported by using appropriate analytical tools and software. The reticulate model can adequately describe such complicated mechanisms ...

Phylogenies ; The evolutionary histories of groups of species are one of the most widely used tools throughout the life sciences, as well as objects of research with in systematic, evolutionary biology. In every phylogenetic analysis reconstruction produces trees. These trees represent the evolutionary histories of many groups of organisms, bacteria due to horizontal gene transfer and plants du...

Reticulate, or non-bifurcating, evolution is now recognized as an important phenomenon shaping the histories of many organisms. It appears to be particularly common in plants, especially in ferns, which have relatively few barriers to intra- and interspecific hybridization. Reticulate evolutionary patterns have been recognized in many fern groups, though very few have been studied rigorously us...

The tree structure is currently the accepted paradigm to represent evolutionary relationships between organisms, species or other taxa. However, horizontal, or reticulate, genomic exchanges are pervasive in nature and confound characterization of phylogenetic trees. Drawing from algebraic topology, we present a unique evolutionary framework that comprehensively captures both clonal and reticula...

The seed exomorphic characteristics of four taxa (Cardamine graeca, C. impatiens subsp. impatiens, raphanifolia and uliginosa) belonging to Cardamine were investigated with scanning electron microscopy (SEM). This study presents characteristics, including colour, shape, winged, measures, coat pattern. Four patterns observed; regularly reticulate, irregularly-reticulate, blister tuberculate-reti...

In an electron microscope study on the developmental cycle of the goat pneumonitis strain of Chlamydia psittaci in L cells, it was observed that miniature reticulate bodies, measuring approximately 0.2 mum in diameter and surrounded by double unit membranes, were produced infrequently from normal-sized reticulate bodies through a "budding"-like process. As little as 0.1 mug of penicillin per ml...

As a typical generalized epilepsy, absence epilepsy can be easily identified during seizures (AS) based on the electrophysiological hallmark that synchronous 2–4 Hz spike and wave discharges (SWDs) widely observed in clinical electroencephalography (EEG). Inspired by animal experimental studies AS may regulated neural circuits within outside corticothalamic (CT) network, we employed computation...

Reticulate evolution is thought to accelerate the process of evolution beyond simple genetic drift and selection, helping to rapidly generate novel hybrids with combinations of adaptive traits. However, the long-standing dogma that reticulate evolutionary processes are likewise advantageous for switching ecological niches, as in microbial pathogen host switch events, has not been explicitly tes...

Reticulate evolutionary processes result in phylogenetic histories that cannot be modeled using a tree topology. Here, we apply methods from topological data analysis to molecular sequence data with reticulations. Using a simple example, we demonstrate the correspondence between nontrivial higher homology and reticulate evolution. We discuss the sensitivity of the standard filtration and show c...