The water wave generation by wave paddle and a freely falling rigid body are examined by using an Incompressible Smoothed Particle Hydrodynamics (ISPH). In the current ISPH method, the pressure was evaluated by solving pressure Poisson equation using a semi-implicit algorithm based on the projection scheme and the source term of pressure Poisson equation contains both of divergence free velocit...

A modified version of the interlayer tunneling model, including interlayer single particle hopping (ISPH), is considered as a phenomenological model to describe cuprate superconductors. The effective ISPH (teff ⊥ ) is taken along with a probability factor P , that involves the normal state pseudogap (Eg). This makes t eff ⊥ to mimic experimental observations that, ISPH is small in the underdope...

We have investigated the mechanism of action of Aquifex aeolicus IspH [E-4-hydroxy-3-methyl-but-2-enyl diphosphate (HMBPP) reductase], together with its inhibition, using a combination of site-directed mutagenesis (K ( M ),V (max)), EPR and (1)H, (2)H, (13)C, (31)P, and (57)Fe-electron-nuclear double resonance (ENDOR) spectroscopy. On addition of HMBPP to an (unreactive) E126A IspH mutant, a re...

C-Arm CT three-dimensional (3-D) digital subtraction angiography (DSA) reconstructions cannot provide temporal information to radiologists. Four-dimensional (4-D) DSA provides a time series of 3-D volumes utilizing temporal dynamics in the two-dimensional (2-D) projections using a constraining image reconstruction approach. Volumetric limiting spatial resolution (VLSR) of 4-D DSA is quantified ...

Isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) represent the two central intermediates in the biosynthesis of isoprenoids. The recently discovered deoxyxylulose 5-phosphate pathway generates a mixture of IPP and DMAPP in its final step by reductive dehydroxylation of 1-hydroxy-2-methyl-2-butenyl 4-diphosphate. This conversion is catalyzed by IspH protein comprising a centra...

Isoprenoids, which are a large group of natural and chemical compounds with a variety of applications as e.g. fragrances, pharmaceuticals and potential biofuels, are produced via two different metabolic pathways, the mevalonate (MVA) pathway and the 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Here, we attempted to replace the endogenous MVA pathway in Saccharomyces cerevisiae by a synthe...

In this study, a new surface tension formulation for modeling incompressible, immiscible three-phase fluid flows in the context of incompressible smoothed particle hydrodynamics (ISPH) in two dimensions has been proposed. A continuum surface forcemodel is employed to transform local surface tension force to a volumetric force while physical surface tension coefficients are expressed as the sum ...

With wide applications, the smoothed particle hydrodynamics method (abbreviated as SPH) has become an important numerical tool for solving complex flows, in particular those with a rapidly moving free surface. For such problems, the incompressible Smoothed Particle Hydrodynamics (ISPH) has been shown to yield better and more stable pressure time histories than the traditional SPH by many papers...

IspG and IspH are proteins that are involved in isoprenoid biosynthesis in most bacteria as well as in malaria parasites and are important drug targets. They contain cubane-type 4Fe-4S clusters that are involved in unusual 2H+/2e- reductions. Here, we report the results of electron paramagnetic resonance spectroscopic investigations of the binding of amino- and thiolo-HMBPP (HMBPP=E-1-hydroxy-2...

Earlier in vivo studies have shown that the sequential action of the IspG and IspH proteins is essential for the reductive transformation of 2C-methyl-d-erythritol 2,4-cyclodiphosphate into dimethylallyl diphosphate and isopentenyl diphosphate via 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. A recombinant fusion protein comprising maltose binding protein and IspG protein domains was purified...