single nucleotide polymorphis

Päivi Lahermo Ulrika Liljedahl Grethe Alnaes Tomas Axelsson Anthony J Brookes Pekka Ellonen Per-Henrik Groop Christer Halldén Dan Holmberg Kristina Holmberg Mauri Keinänen Katrin Kepp Juha Kere Päivi Kiviluoma Vessela Kristensen Cecilia Lindgren Jacob Odeberg Pia Osterman Maija Parkkonen Janna Saarela Maria Sterner Linda Strömqvist Ulvi Talas Maija Wessman Aarno Palotie Ann-Christine Syvänen

To survey the quality of SNP genotyping, a joint Nordic quality assessment (QA) round was organized between 11 laboratories in the Nordic and Baltic countries. The QA round involved blinded genotyping of 47 DNA samples for 18 or six randomly selected SNPs. The methods used by the participating laboratories included all major platforms for small- to medium-size SNP genotyping. The laboratories u...

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Candidate loci involved in domestication and improvement detected by a published 90K wheat SNP array

2017

Lifeng Gao Guangyao Zhao Dawei Huang Jizeng Jia

Selection is one of the most important forces in crop evolution. Common wheat is a major world food crop and a typical allopolyploid with a huge and complex genome. We applied four approaches to detect loci selected in wheat during domestication and improvement. A total of 7,984 candidate loci were detected, accounting for 23.3% of all 34,317 SNPs analysed, a much higher proportion than estimat...

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