نتایج جستجو برای: rosetta

تعداد نتایج: 1746  

Journal: :Nucleic acids research 2004
David E. Kim Dylan Chivian David Baker

The Robetta server (http://robetta.bakerlab.org) provides automated tools for protein structure prediction and analysis. For structure prediction, sequences submitted to the server are parsed into putative domains and structural models are generated using either comparative modeling or de novo structure prediction methods. If a confident match to a protein of known structure is found using BLAS...

2014
Christine Beemelmanns Arielle Woznica Rosanna A. Alegado Alexandra M. Cantley Nicole King Jon Clardy

Studies on the origin of animal multicellularity have increasingly focused on one of the closest living relatives of animals, the choanoflagellate Salpingoeca rosetta. Single cells of S. rosetta can develop into multicellular rosette-shaped colonies through a process of incomplete cytokinesis. Unexpectedly, the initiation of rosette development requires bacterially produced small molecules. Pre...

2008
Kristian Kaufmann Jens Meiler

We introduce small molecule rotamers into the rotamer search protocol used in Rosetta to model small molecule flexibility in docking. Rosetta, a premier protein modeling suite, models side chain flexibility using discrete conformations observed in the Protein Data Bank (PDB). We mimic this concept and build small molecule rotamers based on conformations from the Cambridge Structural Database. W...

2015
Hans Balsiger Kathrin Altwegg Akiva Bar-Nun Jean-Jacques Berthelier Andre Bieler Peter Bochsler Christelle Briois Ursina Calmonte Michael Combi Johan De Keyser Peter Eberhardt Björn Fiethe Stephen A. Fuselier Sébastien Gasc Tamas I. Gombosi Kenneth C. Hansen Myrtha Hässig Annette Jäckel Ernest Kopp Axel Korth Lena Le Roy Urs Mall Bernard Marty Olivier Mousis Tobias Owen Henri Rème Martin Rubin Thierry Sémon Chia-Yu Tzou J. Hunter Waite Peter Wurz

Comets have been considered to be representative of icy planetesimals that may have contributed a significant fraction of the volatile inventory of the terrestrial planets. For example, comets must have brought some water to Earth. However, the magnitude of their contribution is still debated. We report the detection of argon and its relation to the water abundance in the Jupiter family comet 6...

Journal: :Science 2010
Srivatsan Raman Oliver F Lange Paolo Rossi Michael Tyka Xu Wang James Aramini Gaohua Liu Theresa A Ramelot Alexander Eletsky Thomas Szyperski Michael A Kennedy James Prestegard Gaetano T Montelione David Baker

Conventional protein structure determination from nuclear magnetic resonance data relies heavily on side-chain proton-to-proton distances. The necessary side-chain resonance assignment, however, is labor intensive and prone to error. Here we show that structures can be accurately determined without nuclear magnetic resonance (NMR) information on the side chains for proteins up to 25 kilodaltons...

Journal: :Journal of Astronomical Instrumentation 2021

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