Nerve signaling in humans and chemical sensing in bacteria both rely on the controlled opening and closing of the ion-conducting pore in pentameric ligand-gated ion channels. With the help of a multiscale simulation approach that combines mixed elastic network model calculations with molecular dynamics simulations, we study the opening and closing of the pore in Gloeobacter violaceus channel GL...

Pore structure, tortuosity and permeability are considered key properties of porous materials such as cement pastes to understand their long-term durability performance. Three-dimensional image analysis techniques were used in this study to quantify pore size, effective porosity, tortuosity, and permeability from the X-ray computed tomography (CT) images of deteriorated pastes that were subject...

Network modeling is used to study the flow in porous media of Ellis and Herschel–Bulkley fluids, which model a large group of time-independent non-Newtonian fluids. Previous work is extended to include yield-stress and shear-thickening phenomena. We use two topologically-disordered networks representing a sand pack and Berea sandstone. Analytical expressions for the volumetric flow rate in a si...

solute transport processes are affected by soil pore water velocity distribution. pore size distribution, which can be used to infer pore water velocity distribution, can be estimated from a soil water retention curve (n). in this study, a solute breakthrough curve was simulated using soil hydraulic parameters in four different soils. to evaluate the proposed model, predictions were compared to...