نتایج جستجو برای: m06 2x

تعداد نتایج: 3641  

Journal: :Physical chemistry chemical physics : PCCP 2013
Mats Linder Tore Brinck

This work discusses the dependence of transition state geometries on the choice of quantum chemical optimization method for the extensively studied Diels-Alder reaction. Rather significant differences are observed between post-Hartree-Fock methods and (hybrid) density functional theory, where the latter predicts larger asynchronicities. The results show that the low MP2 asynchronicity observed ...

Journal: :Journal of computational chemistry 2016
Simon W. L. Hogan Tanja Van Mourik

The competition between hydrogen- and halogen-bonding interactions in complexes of 5-halogenated 1-methyluracil (XmU; X = F, Cl, Br, I, or At) with one or two water molecules in the binding region between C5-X and C4=O4 is investigated with M06-2X/6-31+G(d). In the singly-hydrated systems, the water molecule forms a hydrogen bond with C4=O4 for all halogens, whereas structures with a halogen bo...

Journal: :Physical chemistry chemical physics : PCCP 2013
Tetiana A Zubatiuk Oleg V Shishkin Leonid Gorb Dmytro M Hovorun Jerzy Leszczynski

We report the results of the first comprehensive DFT study on the d(A)3·d(T)3 and d(G)3·d(C)3 nucleic acid duplexes. The ability of mini-helixes to preserve the conformation of B-DNA in the gas phase and under the influence of such factors as: solvent, uncompensated charge, and counter-ions was evaluated using M06-2X functional with 6-31G(d,p) basis set. The accuracy of the models was ascertain...

Journal: :Molecules 2015
Cláudio E Rodrigues-Santos Aurea Echevarria Carlos M R Sant'Anna Thiago B Bitencourt Maria G Nascimento Glauco F Bauerfeldt

In this work, the theoretical description of the 4- and 3-substituted-cinnamic acid esterification with different electron donating and electron withdrawing groups was performed at the B3LYP and M06-2X levels, as a two-step process: the O-protonation and the nucleophile attack by ethanol. In parallel, an experimental work devoted to the synthesis and characterization of the substituted-cinnamat...

2016
Jelena Tošović Svetlana Marković

This work contributes to the structure clarification of chlorogenic acid (5-O-caffeoylquinic acid, 5CQA) by comparing the experimental and simulated IR, Raman, 1H-NMR, 13C-NMR, and UV-vis spectra. The lowest-energy conformers in the gas-phase and solution were used for all calculations. Very good agreement between all experimental and simulated spectra indicates correct arrangement of the atoms...

2015
Douglas E. Stack Peter Meikle

Mechanistic insights into the reaction of an estrogen o-quinone with deoxyguanosine has been further investigated using high level density functional calculations in addition to the use of 4-hyroxycatecholestrone (4-OHE₁) regioselectivity labeled with deuterium at the C1-position. Calculations using the M06-2X functional with large basis sets indicate the tautomeric form of an estrogen-DNA addu...

Journal: :Physical chemistry chemical physics : PCCP 2013
Ivan Ljubić Brunislav Matasović Marija Bonifačić

A remarkable buffer-mediated control between free-radical substitution (FRS) and proton-coupled electron transfer (PCET) is demonstrated for the reaction between iodoethane and the α-hydroxyethyl radical in neutral aqueous solution in the presence of bicarbonate or phosphate buffer. The reaction is initiated by the γ-radiolysis of the water solvent, and the products, either the iodine atom (FRS...

Journal: :Physical chemistry chemical physics : PCCP 2011
Raphael F Ribeiro Aleksandr V Marenich Christopher J Cramer Donald G Truhlar

We present M06-2X density functional calculations of the chloroform/water partition coefficients of cytosine, thymine, uracil, adenine, and guanine and calculations of the free energies of association of selected unsubstituted and alkylated nucleotide base pairs in chloroform and water. Both hydrogen bonding and π-π stacking interactions are considered. Solvation effects are treated using the c...

Journal: :Physical chemistry chemical physics : PCCP 2016
Tanjin He Shuang Li Yawei Chi Hong-Bo Zhang Zhi Wang Bin Yang Xin He Xiaoqing You

In the search for an accurate yet inexpensive method to predict thermodynamic properties of large hydrocarbon molecules, we have developed an automatic and adaptive distance-based group contribution (DBGC) method. The method characterizes the group interaction within a molecule with an exponential decay function of the group-to-group distance, defined as the number of bonds between the groups. ...

2014
Alexander A. Parent Daniel H. Ess John A. Katzenellenbogen

We describe the quantitative [2 + 2] photocycloaddition of crystalline trans-2,4-dichloro-6-styrylpyrimidine to produce the corresponding htt r-ctt cyclobutane dimer, and we present (1)H NMR analysis of the photolysis of this and six other mono-, di-, and triazastilbenes in solid and solution states. Density functional (M06-2X) and correlated ab initio (MP2) calculations were used to obtain int...

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