نتایج جستجو برای: direct genotyping

تعداد نتایج: 447487  

Journal: :Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin 2014
V A Janes R Minnaar G Koen H van Eijk K Dijkman-de Haan D Pajkrt K C Wolthers K S Benschop

Enteroviruses (EV) and human parechoviruses (HPeV) are endemic worldwide. These infections are a constant cause of hospitalisation and severe disease, predominantly in young children and infants. Coordinated monitoring and surveillance are crucial to control these infections. We have monitored EV and HPeV epidemiology in Amsterdam from 2007 to 2011 with real-time RT-PCR and direct genotyping, f...

Journal: :Nucleic acids research 2003
Tom R Gaunt Lesley J Hinks Hamid Rassoulian Ian N M Day

Electrophoresis continues to be a mainstay in molecular genetic laboratories for checking, sizing and separating both PCR products, nucleic acids derived from in vivo or in vitro sources and nucleic acid-protein complexes. Many genomic and genetic applications demand high throughput, such as the checking of amplification products from many loci, from many clones, from many cell lines or from ma...

Journal: :Water research 2009
Leslie Ogorzaly Adeline Tissier Isabelle Bertrand Armand Maul Christophe Gantzer

Recent studies have shown the increasing interest of F-specific RNA phage genotyping to identify major sources of faecal contamination in waters. This study, conducted in a river located in an urbanized watershed with recognized anthropogenic influences, was aimed at evaluating the relevance of direct phage genotyping by real-time RT-PCR. One hundred percent of positive results were obtained wi...

2017
Robert Morlock Glenn D. Braunstein

Introduction Genotyping-based treatment decisions may optimize treatment response and minimize adverse drug events (ADEs) in patients with chronic pain. Objectives To estimate the financial impact of genotyping-based treatment decisions in patients with moderate to severe chronic pain in a managed care setting. Methods A budget impact model was built with a 1-year time horizon to estimate c...

2012
Pingping Tao Weiping Zheng Yungen Wang Mei-lu Bian

Persistent infection of high-risk human papillomavirus (HPV) has been recognized as the direct cause of cervical carcinoma. Therefore, detection and genotyping of HPV are important to cervical-cancer screening. In this study, we have evaluated the efficacy of flow-through hybridization and gene chip (HybriMax) on HPV genotyping through comparison of the results with Hybrid Capture II (HC-II) an...

Journal: :International journal for parasitology 2005
C Sreekumar D E Hill K B Miska M C B Vianna L Yan R L Myers J P Dubey

A Pyrosequencing assay, based on SAG2 gene polymorphisms, was designed for genotyping and detection of multiple infections of Toxoplasma gondii. The assay was tested on samples spiked with DNA from single and multiple genotypes of T. gondii and also on a DNA sample from the brain of a rat with multiple infections. To evaluate the comparative efficacy of the assay, identical samples were also an...

Journal: :Journal of clinical microbiology 2013
Sophie Vallet Sylvie Larrat Syria Laperche Hélène Le Guillou-Guillemette Florence Legrand-Abravanel Françoise Bouchardeau Adeline Pivert Cécile Henquell Audrey Mirand Elisabeth André-Garnier Valérie Giordanengo Gisèle Lagathu Vincent Thibault Caroline Scholtes Evelyne Schvoerer Catherine Gaudy-Graffin Sarah Maylin Pascale Trimoulet Etienne Brochot Sébastien Hantz Joël Gozlan Anne-Marie Roque-Afonso Patrick Soussan Jean-Christophe Plantier Charlotte Charpentier Stéphane Chevaliez Philippe Colson Vincent Mackiewicz Lina Aguilera Sylvain Rosec Stéphanie Gouriou Nelly Magnat Françoise Lunel-Fabiani Jacques Izopet Patrice Morand Christopher Payan Jean-Michel Pawlotsky

Hepatitis C virus (HCV) protease inhibitor resistance-associated substitutions are selected during triple-therapy breakthrough. This multicenter quality control study evaluated the expertise of 23 French laboratories in HCV protease inhibitor resistance genotyping. A panel of 12 well-defined blinded samples comprising two wild-type HCV strains, nine transcripts from synthetic NS3 mutant samples...

2015
Jack Bee Chook Lai Yee Ong Yutaka Takebe Kok Gan Chan Martin Choo Adeeba Kamarulzaman Kok Keng Tee

A molecular genotyping assay for human immunodeficiency virus type 1 (HIV-1) circulating in Southeast Asia is difficult to design because of the high level of genetic diversity. We developed a multiplex real-time polymerase chain reaction (PCR) assay to detect subtype B, CRF01_AE, CRF33_01B, and three newly described circulating recombinant forms, (CRFs) (CRF53_01B, CRF54_01B, and CRF58_01B). A...

Journal: :Current issues in molecular biology 2003
Pui-Yan Kwok Xiangning Chen

Single nucleotide polymorphism (SNP) detection technologies are used to scan for new polymorphisms and to determine the allele(s) of a known polymorphism in target sequences. SNP detection technologies have evolved from labor intensive, time consuming, and expensive processes to some of the most highly automated, efficient, and relatively inexpensive methods. Driven by the Human Genome Project,...

Journal: :Clinical chemistry 2006
Pamela Kepper Richard Reinhardt Andreas Dahl Hans Lehrach Sascha Sauer

BACKGROUND Matrix-assisted laser desorption/ionization (MALDI) mass spectrometry is a powerful tool in biomolecule analysis with a wide range of application possibilities, including genotyping of single-base variations (also known as single-nucleotide polymorphisms, or SNPs) for candidate gene studies and diagnostic typing of DNA markers. We tested a method that does not require stringent purif...

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