نتایج جستجو برای: ancestral state reconstruction

تعداد نتایج: 984857  

Journal: :Bioinformatics 2018
Christopher Monit Richard A Goldstein

Summary Existing ancestral sequence reconstruction techniques are ill-suited to investigating substitutions on a single branch of interest. We present SubRecon, an implementation of a hybrid technique integrating joint and marginal reconstruction for protein sequence data. SubRecon calculates the joint probability of states at adjacent internal nodes in a phylogeny, i.e. how the state has chang...

Journal: :Molecular phylogenetics and evolution 2005
Bret Larget Joseph B Kadane Donald L Simon

We describe a Bayesian approach to estimate phylogeny and ancestral genome arrangements on the basis of genome arrangement data using a model in which gene inversion is the sole mechanism of change. While we have described a similar method to estimate phylogenetic relationships in the statistics literature, the novel contribution of the present work is the description of a method to compute pro...

Journal: :Molecular phylogenetics and evolution 2010
Jeremy C Andersen Jin Wu Matthew E Gruwell Rodger Gwiazdowski Sharlene E Santana Natalie M Feliciano Geoffrey E Morse Benjamin B Normark

Armored scale insects (Hemiptera: Diaspididae) are among the most invasive insects in the world. They have unusual genetic systems, including diverse types of paternal genome elimination (PGE) and parthenogenesis. Intimate relationships with their host plants and bacterial endosymbionts make them potentially important subjects for the study of co-evolution. Here, we expand upon recent phylogene...

2010
Sebastien Roch

The matrix of evolutionary distances is a model-based statistic, derived from molecular sequences, summarizing the pairwise phylogenetic relationships between a collection of species. Phylogenetic tree reconstruction methods relying on this matrix are relatively fast and thus widely used in molecular systematics. However, because of their intrinsic reliance on summary statistics, distance-matri...

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