نتایج جستجو برای: transcriptome

تعداد نتایج: 36537  

Journal: :Journal of immunology 2012
Benjamin L Duell Alison J Carey Chee K Tan Xiangqin Cui Richard I Webb Makrina Totsika Mark A Schembri Petra Derrington Helen Irving-Rodgers Andrew J Brooks Allan W Cripps Michael Crowley Glen C Ulett

Early transcriptional activation events that occur in bladder immediately following bacterial urinary tract infection (UTI) are not well defined. In this study, we describe the whole bladder transcriptome of uropathogenic Escherichia coli (UPEC) cystitis in mice using genome-wide expression profiling to define the transcriptome of innate immune activation stemming from UPEC colonization of the ...

2015
Sonia J. Moisá Daniel W. Shike Lindsay Shoup Sandra L. Rodriguez-Zas Juan J. Loor Pascale Chavatte-Palmer

In model organisms both the nutrition of the mother and the young offspring could induce long-lasting transcriptional changes in tissues. In livestock, such changes could have important roles in determining nutrient use and meat quality. The main objective was to evaluate if plane of maternal nutrition during late-gestation and weaning age alter the offspring's Longissimus muscle (LM) transcrip...

2013
Andrea Rau Mélina Gallopin Gilles Celeux Florence Jaffrézic

This vignette illustrates the use of the HTSFilter package to filter replicated data from transcriptome sequencing experiments (e.g., RNA sequencing data) for a variety of different data classes: matrix , data.frame, CountDataSet (the S4 class associated with the DESeq package), and the S3 classes associated with the edgeR package (DGEList , DGEExact , DGEGLM , and DGELRT ).

2013
Andrea Rau Mélina Gallopin Gilles Celeux Florence Jaffrézic

This vignette illustrates the use of the HTSFilter package to filter replicated data from transcriptome sequencing experiments (e.g., RNA sequencing data) for a variety of different data classes: matrix , data.frame, CountDataSet (the S4 class associated with the DESeq package), the S3 classes associated with the edgeR package (DGEList , DGEExact , DGEGLM , and DGELRT ), and the S4 class associ...

Journal: :molecular biology research communications 2012
sasan mohsenzadeh maryam esmaeili hassan mohabatkar

glutathione transferases are multifunctional proteins involved in several diverse intracellular events such as primary and secondary metabolisms, signaling and stress metabolism. these enzymes have been subdivided into eight classes in plants. the phi class, being plant specific, is the most represented. in the present study, based on the sequences available at genbank, different primers were d...

Journal: :Journal of Investigative Dermatology 2023

Recent findings demonstrate that human life is multiorganismal and microbe-host interactions play an important role in homeostasis disease. While some insights have been generated the gut, our understanding of skin still limited. We integrated metagenomic information from cutaneous microbes with transcriptome healthy, non-lesional lesional atopic psoriatic (n=272) to elucidate key pathways infl...

2015
Sara Amorim-Vaz Van Du T Tran Sylvain Pradervand Marco Pagni Alix T Coste Dominique Sanglard

UNLABELLED In vivo transcriptional analyses of microbial pathogens are often hampered by low proportions of pathogen biomass in host organs, hindering the coverage of full pathogen transcriptome. We aimed to address the transcriptome profiles of Candida albicans, the most prevalent fungal pathogen in systemically infected immunocompromised patients, during systemic infection in different hosts....

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