Biomedical text mining promises to assist biologists in quickly navigating the combined knowledge in their domain. This would allow improved understanding of the complex interactions within biological systems and faster hypothesis generation. New biomedical research articles are published daily and text mining tools are only as good as the corpus from which they work. Many text mining tools are...

Biomedical text mining promises to assist biologists in quickly navigating the combined knowledge in their domain. This would allow improved understanding of the complex interactions within biological systems and faster hypothesis generation. New biomedical research articles are published daily and text mining tools are only as good as the corpus from which they work. Many text mining tools are...

Biomedical text mining promises to assist biologists in quickly navigating the combined knowledge in their domain. This would allow improved understanding of the complex interactions within biological systems and faster hypothesis generation. New biomedical research articles are published daily and text mining tools are only as good as the corpus from which they work. Many text mining tools are...

In this poster we present a recent extension of the OntoGene text mining utilities, which enables the generation of annotated pdf versions of the original articles. While a text-based view (in XML or HTML) can allow a more flexible presentation of the results of a text mining pipeline, for some applications, notably in assisted curation, it might be desirable to present the annotations in the c...

The amount of digital information that is created and used is progressively rising along with the growth of sophisticated hardware and software. In addition, real-world data come in a diversity of forms and can be tremendously bulky. This has augmented the need for powerful algorithms that can deduce and dig out appealing facts and useful information from these data. Text Mining (TM), which is ...

This paper describes a text mining tool that performs two tasks, namely document clustering and text summarization. These tasks have, of course, their corresponding counterpart in “conventional” data mining. However, the textual, unstructured nature of documents makes these two text mining tasks considerably more difficult than their data mining counterparts. In our system document clustering i...

Text mining or knowledge discovery is that sub process of data mining, which is widely being used to discover hidden patterns and significant information from the huge amount of unstructured written material. The proliferation of clouds, research and technologies are responsible for the creation of vast volumes of data. This kind of data cannot be used until or unless specific information or pa...

Informatics methods, such as text mining and natural language processing, are always involved in bioinformatics research. In this study, we discuss text mining and natural language processing methods in bioinformatics from two perspectives. First, we aim to search for knowledge on biology, retrieve references using text mining methods, and reconstruct databases. For example, protein-protein int...