To explore whether the crenarchaeal consortium found in the rhizosphere is distinct from the assemblage of crenarchaeotes inhabiting bulk soil, PCR-single-stranded-conformation polymorphism (PCR-SSCP) profiles were generated for 76 plant samples collected from native environments. Divergent terrestrial plant groups including bryophytes (mosses), lycopods (club mosses), pteridophytes (ferns), gy...

Sodium salicylate (1,000 mug/ml) was delivered through a drip irrigation system to agricultural field soils planted to tomato and infested with Pseudomonas putida PpG7, the host of the salicylate catabolic plasmid NAH7. In nonfumigated soils infested with approximately 10 CFU of PpG7 per g in the top 30 cm, population densities were increased up to 112-fold within 14 days of the initial applica...

This paper reviews investigations on interactions between soil microbiota, and plants during the interdisciplinary program ‘Ecosystem research in the Bornhöved Lake district’; it deals with processes associated with the rhizosphere at four agricultural, and forest ecosystems. Emphasis was placed on a black alder forest representing the interface between terrestrial and aquatic ecosystems. In th...

The effects of elevated atmospheric CO2 concentration on soil microbial communities have been previously recorded. However, limited information is available regarding the response of methanogenic communities to elevated CO2 in freshwater marshes. Using high-throughput sequencing and real-time quantitative PCR, we compared the abundance and community structure of methanogens in different compart...

The effect of two fungicides, Caocobre and Ridomil on rhizosphere phenomenon of Cocoa (Theobroma cacao L) seedlings has been studied at different stages of the development of the plant growing in pots. Fungal population in the rhizophere soil was generally higher than in the non-rhizosphere soil. The total number of fungal population in both the rhizosphere and non-rhizosphere was highest on th...

Background: In consideration for the increasing widespread use of genetically modified (GM) crops, one of the important issues for assessment is the effect of GM crops on soil microbial communities Objectives: In this study, T2 chitinase-transgenic cotton (line #57) and its non-transgenic line were investigated for bacterial and fungal dynamics...

Watermelon is susceptible to Fusarium wilt in successively mono-cropped soil. Pot experiments were carried out to investigate the effect of intercropping with aerobic rice on Fusarium wilt in watermelon. The tested soil was classified as a loam soil, previously planted with watermelon and collected from Hexian county, Anhui province, China. The results obtained are listed as follows: (1) 66.7% ...

Microbial communities in soil provide a wide range of ecosystem services. On the small scale, nutrient rich hotspots in soil developed from the activities of animals or plants are important drivers for the composition of microbial communities and their functional patterns. However, in subsoil, the spatial heterogeneity of microbes with differing lifestyles has been rarely considered so far. In ...

The symbiosis between tall fescue (Festuca arundinaceum) and a shoot-specific fungal endophyte (Neotyphodium coenophialum) has been relatively well studied but little attention has been given to how this relationship may impact the soil microbial community. Understanding how the symbiosis may structure soil microbial communities is important for understanding the cascade of effects that this sy...

The impact of multiple-year (0–5 years) cultivation of transgenic Bacillus thuringiensis (Bt) cotton on the functional bacterial populations in rhizosphere soil was investigated. The transgenic Bt ? CpTI cotton line SGK321 and a non-Bt cotton line Shiyuan321 were planted in four fields in which Bt cotton had been continuously cultivated for 0, 1, 3, and 5 years. Rhizosphere soil samples were co...