Although microbial systems are well suited for studying concepts in ecological theory, little is known about how microbial communities respond to long-term periodic perturbations beyond diel oscillations. Taking advantage of an ongoing microcosm experiment, we studied how methanotrophic microbial communities adapted to disturbances in energy input over a 20-day cycle period. Sequencing of bacte...

The development and application of metagenomic approaches have provided an opportunity to study and define horizontal gene transfer (HGT) on the level of microbial communities. However, no current metagenomic data simulation tools offers the option to introduce defined HGT within a microbial community. Here, we present HgtSIM, a pipeline to simulate HGT event among microbial community members w...

Microbes are single celled organisms that can be found everywhere in the world from the air to the soil on the ground. Generally speaking, microbes will be found in extremely close proximity to other species of microbes due to mutual beneficial relationships where one species produces something that another species requires for survival; these groups of microbes are called a community. A widesp...

Microbial fuel cells (MFCs) are a type of fuel cells that use bacteria as biocatalyst to oxidize an organic substrate to release electrons, which can be harvested in an external circuit to produce electric energy. This technology hold the potential to help overcome energetic problems and at the same time treat waste water more efficiently than the current employed techniques. Despite all this p...

Anaerobic digestion (AD) involves a consortium of microorganisms that convert substrates into biogas containing methane for renewable energy. The technology has suffered from the perception of being periodically unstable due to limited understanding of the relationship between microbial community structure and function. The emphasis of this review is to describe microbial communities in digeste...