نتایج جستجو برای: metabolome

تعداد نتایج: 4791  

Journal: :Cell 2016
Christoph A. Thaiss Maayan Levy Tal Korem Lenka Dohnalová Hagit Shapiro Diego A. Jaitin Eyal David Deborah R. Winter Meital Gury-BenAri Evgeny Tatirovsky Timur Tuganbaev Sara Federici Niv Zmora David Zeevi Mally Dori-Bachash Meirav Pevsner-Fischer Elena Kartvelishvily Alexander Brandis Alon Harmelin Oren Shibolet Zamir Halpern Kenya Honda Ido Amit Eran Segal Eran Elinav

The intestinal microbiota undergoes diurnal compositional and functional oscillations that affect metabolic homeostasis, but the mechanisms by which the rhythmic microbiota influences host circadian activity remain elusive. Using integrated multi-omics and imaging approaches, we demonstrate that the gut microbiota features oscillating biogeographical localization and metabolome patterns that de...

2014
Katarzyna Bozek Yuning Wei Zheng Yan Xiling Liu Jieyi Xiong Masahiro Sugimoto Masaru Tomita Svante Pääbo Raik Pieszek Chet C. Sherwood Patrick R. Hof John J. Ely Dirk Steinhauser Lothar Willmitzer Jens Bangsbo Ola Hansson Josep Call Patrick Giavalisco Philipp Khaitovich

Metabolite concentrations reflect the physiological states of tissues and cells. However, the role of metabolic changes in species evolution is currently unknown. Here, we present a study of metabolome evolution conducted in three brain regions and two non-neural tissues from humans, chimpanzees, macaque monkeys, and mice based on over 10,000 hydrophilic compounds. While chimpanzee, macaque, an...

2013
Atsushi Fukushima Miyako Kusano

Metabolomics has grown greatly as a functional genomics tool, and has become an invaluable diagnostic tool for biochemical phenotyping of biological systems. Over the past decades, a number of databases involving information related to mass spectra, compound names and structures, statistical/mathematical models and metabolic pathways, and metabolite profile data have been developed. Such databa...

2014
Albert Gargallo-Garriga Jordi Sardans Míriam Pérez-Trujillo Albert Rivas-Ubach Michal Oravec Kristyna Vecerova Otmar Urban Anke Jentsch Juergen Kreyling Carl Beierkuhnlein Teodor Parella Josep Peñuelas

Shoots and roots are autotrophic and heterotrophic organs of plants with different physiological functions. Do they have different metabolomes? Do their metabolisms respond differently to environmental changes such as drought? We used metabolomics and elemental analyses to answer these questions. First, we show that shoots and roots have different metabolomes and nutrient and elemental stoichio...

Journal: :Molecular Systems Biology 2009
Jie Yuan Christopher D Doucette William U Fowler Xiao-Jiang Feng Matthew Piazza Herschel A Rabitz Ned S Wingreen Joshua D Rabinowitz

Despite extensive study of individual enzymes and their organization into pathways, the means by which enzyme networks control metabolite concentrations and fluxes in cells remains incompletely understood. Here, we examine the integrated regulation of central nitrogen metabolism in Escherichia coli through metabolomics and ordinary-differential-equation-based modeling. Metabolome changes trigge...

Journal: :Journal of cellular physiology 2012
Caroline H Johnson Frank J Gonzalez

The metabolome is a data-rich source of information concerning all the low-molecular-weight metabolites in a biofluid, which can indicate early biological changes to the host due to perturbations in metabolic pathways. Major changes can be seen after minor stimuli, which make it a valuable target for analysis. Due to the diverse and sensitive nature of the metabolome, studies must be designed i...

2015
Angela Marcobal Tahir Yusufaly Steven Higginbottom Michael Snyder Justin L. Sonnenburg George I. Mias

The microbiome has been implicated directly in host health, especially host metabolic processes and development of immune responses. These are particularly important in infants where the gut first begins being colonized, and such processes may be modeled in mice. In this investigation we follow longitudinally the urine metabolome of ex-germ-free mice, which are colonized with two bacterial spec...

2017
Farhana R Pinu Silas G Villas-Boas Raphael Aggio

Sample preparation is one of the most important steps in metabolome analysis. The challenges of determining microbial metabolome have been well discussed within the research community and many improvements have already been achieved in last decade. The analysis of intracellular metabolites is particularly challenging. Environmental perturbations may considerably affect microbial metabolism, whi...

2017
Kerry E. Boyle Hilary T. Monaco Maxime Deforet Jinyuan Yan Zhe Wang Kyu Rhee Joao B. Xavier

How does metabolism influence social behavior? This fundamental question at the interface of molecular biology and social evolution is hard to address with experiments in animals, and therefore, we turned to a simple microbial system: swarming in the bacterium Pseudomonas aeruginosa. Using genetic engineering, we excised a locus encoding a key metabolic regulator and disrupted P. aeruginosa's m...

Journal: :Analytical chemistry 2007
Joshua D Rabinowitz Elizabeth Kimball

Cellular metabolome analysis by chromatography-mass spectrometry (MS) requires prior metabolite extraction. We examined a diversity of solvent systems for extraction of water-soluble metabolites from Escherichia coli. Quantitative yields of approximately 100 different metabolites were measured by liquid chromatography-tandem MS and displayed in clustered heat map format. Many metabolites, inclu...

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