Recently the authors developed a modular approach to assess the storage capacity of RAM-based neural networks 1] that can be applied to any architecture. It is based on collisions of information during the learning process. It has already been applied to the GNU architecture. In this paper, the technique is applied to the pyramid. The results explain practical problems reported in the literatur...

UNLABELLED MpTheory Java library is an open-source project collecting a set of objects and algorithms for modeling observed dynamics by means of the Metabolic P (MP) theory, that is, a mathematical theory introduced in 2004 for modeling biological dynamics. By means of the library, it is possible to model biological systems both at continuous and at discrete time. Moreover, the library comprise...

We present Open Multi-Processing (OpenMP) version of Fortran 90 programs for solving the Gross-Pitaevskii (GP) equation for a Bose-Einstein condensate in one, two, and three spatial dimensions, optimized for use with GNU and Intel compilers. We use the split-step Crank-Nicolson algorithm for imaginaryand real-time propagation, which enables efficient calculation of stationary and non-stationary...

Summary The ease with which phylogenomic data can be generated has drastically escalated the computational burden for even routine phylogenetic investigations. To address this, we present phyx : a collection of programs written in C ++ to explore, manipulate, analyze and simulate phylogenetic objects (alignments, trees and MCMC logs). Modelled after Unix/GNU/Linux command line tools, individual...

MOTIVATION To reliably assess the effects of unknown chemicals on the development of fluorescently labeled sensory-, moto- and interneuron populations in the spinal cord of zebrafish, automated data analysis is essential. RESULTS For the evaluation of a high-throughput screen of a large chemical library, we developed a new method for the automated extraction of quantitative information from g...

SUMMARY We present a tool designed for visualization of large-scale genetic and genomic data exemplified by results from genome-wide association studies. This software provides an integrated framework to facilitate the interpretation of SNP association studies in genomic context. Gene annotations can be retrieved from Ensembl, linkage disequilibrium data downloaded from HapMap and custom data i...

A software Defined Radio (SDR) device employs a reconfigurable hardware (Universal Software Radio Peripheral-USRP) that may be programmed over-the-air or software (GNU Radio) to function under different Wireless standards. This paper analyzes the effect of various parameters such as channel noise, frequency offset, timing offset, timing beta, FLL (Frequency Lock Loop) bandwidth, Costas loop (ph...