نتایج جستجو برای: e coliسویه rosetta de3

تعداد نتایج: 1019173  

2018

Single-particle electron cryo-microscopy (cryo-EM) has become a popular method for high-resolution study of the structural and functional properties of proteins. However, sufficient expression and purification of membrane proteins holds many challenges. We describe methods to overcome these obstacles using ClC-rm1, a prokaryotic chloride channel (ClC) family protein from Ralstonia metallidurans...

2011
Rhiju Das

A complete macromolecule modeling package must be able to solve the simplest structure prediction problems. Despite recent successes in high resolution structure modeling and design, the Rosetta software suite fares poorly on small protein and RNA puzzles, some as small as four residues. To illustrate these problems, this manuscript presents Rosetta results for four well-defined test cases: the...

Journal: :Journal of chemical theory and computation 2017
Rebecca F Alford Andrew Leaver-Fay Jeliazko R Jeliazkov Matthew J O'Meara Frank P DiMaio Hahnbeom Park Maxim V Shapovalov P Douglas Renfrew Vikram K Mulligan Kalli Kappel Jason W Labonte Michael S Pacella Richard Bonneau Philip Bradley Roland L Dunbrack Rhiju Das David Baker Brian Kuhlman Tanja Kortemme Jeffrey J Gray

Over the past decade, the Rosetta biomolecular modeling suite has informed diverse biological questions and engineering challenges ranging from interpretation of low-resolution structural data to design of nanomaterials, protein therapeutics, and vaccines. Central to Rosetta's success is the energy function: a model parametrized from small-molecule and X-ray crystal structure data used to appro...

2017

Single-particle electron cryo-microscopy (cryo-EM) has become a popular method for high-resolution study of the structural and functional properties of proteins. However, sufficient expression and purification of membrane proteins holds many challenges. We describe methods to overcome these obstacles using ClC-rm1, a prokaryotic chloride channel (ClC) family protein from Ralstonia metallidurans...

2018

Single-particle electron cryo-microscopy (cryo-EM) has become a popular method for high-resolution study of the structural and functional properties of proteins. However, sufficient expression and purification of membrane proteins holds many challenges. We describe methods to overcome these obstacles using ClC-rm1, a prokaryotic chloride channel (ClC) family protein from Ralstonia metallidurans...

2017

Single-particle electron cryo-microscopy (cryo-EM) has become a popular method for high-resolution study of the structural and functional properties of proteins. However, sufficient expression and purification of membrane proteins holds many challenges. We describe methods to overcome these obstacles using ClC-rm1, a prokaryotic chloride channel (ClC) family protein from Ralstonia metallidurans...

2017

Single-particle electron cryo-microscopy (cryo-EM) has become a popular method for high-resolution study of the structural and functional properties of proteins. However, sufficient expression and purification of membrane proteins holds many challenges. We describe methods to overcome these obstacles using ClC-rm1, a prokaryotic chloride channel (ClC) family protein from Ralstonia metallidurans...

2017
Grietje Kuipers Alexandros Karyolaimos Zhe Zhang Nurzian Ismail Gianluca Trinco David Vikström Dirk Jan Slotboom Jan-Willem de Gier

BACKGROUND To optimize the production of membrane and secretory proteins in Escherichia coli, it is critical to harmonize the expression rates of the genes encoding these proteins with the capacity of their biogenesis machineries. Therefore, we engineered the Lemo21(DE3) strain, which is derived from the T7 RNA polymerase-based BL21(DE3) protein production strain. In Lemo21(DE3), the T7 RNA pol...

2015
Steve A. Chien Gregg Rabideau Daniel Tran Martina Troesch Joshua Doubleday Federico Nespoli Miguel Perez Ayucar Marc Costa Sitja Claire Vallat Bernhard Geiger Nico Altobelli Manuel Fernandez Fran Vallejo Rafael Andres Michael Kueppers

Rosetta is a European Space Agency (ESA) cornerstone mission that entered orbit around the comet 67P/Churyumov-Gerasimenko in August 2014 and will escort the comet for a 1.5 year nominal mission offering the most detailed study of a comet ever undertaken by humankind. The Rosetta orbiter has 11 scientific instruments (4 remote sensing) and the Philae lander to make complementary measurements of...

2003
Cindy Kong Perry Alexander

The Rosetta systems level design language [1, 2] is an emerging standard designed to address the integration of information across domains. Specifically, Rosetta directly supports specifying and integrating models whose basic computation models differ due to technology domain. Rosetta achieves this by providing a framework where models of computation and domain specific information can be defin...

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