نتایج جستجو برای: lincrna

تعداد نتایج: 344  

2014
Gengze Wu Jin Cai Yu Han Jinghai Chen Zhan-Peng Huang Caiyu Chen Yue Cai Hefei Huang Yujia Yang Yukai Liu Zaicheng Xu Xiaoqun Zhang Xiaoyun Hu Dan Zhong Guo-Cheng Yuan Da-Zhi Wang Chunyu Zeng

Dept of Cardiology, Chongqing Institute of Cardiology, Daping Hospital, Third Military Medical University, Chongqing, China; Dept of Cardiology, Boston Children’s Hospital, Harvard Medical School, Boston, MA; Dept of Biochemistry and Molecular Biology, College of Basic Medical Sciences, Third Military Medical University, Chongqing, China; Dept of Biostatistics and Computational Biology, Dana-Fa...

2013
Brent S Pedersen Ivana V Yang Subhajyoti De

Motivation: The biological significance of genomic features is often context-dependent. Annotating a particular dataset with existing, external data can provide insight into function. Results: We present CruzDB, a fast and intuitive programmatic interface to the UCSC genome browser that facilitates integrative analyses of diverse local and remotely hosted datasets. We showcase the syntax of Cru...

Journal: :Cell 2013
Sharon R. Grossman Kristian G. Andersen Ilya Shlyakhter Shervin Tabrizi Sarah Winnicki Angela Yen Daniel J. Park Dustin Griesemer Elinor K. Karlsson Sunny H. Wong Moran Cabili Richard A. Adegbola Rameshwar N.K. Bamezai Adrian V.S. Hill Fredrik O. Vannberg John L. Rinn Eric S. Lander Stephen F. Schaffner Pardis C. Sabeti

Although several hundred regions of the human genome harbor signals of positive natural selection, few of the relevant adaptive traits and variants have been elucidated. Using full-genome sequence variation from the 1000 Genomes (1000G) Project and the composite of multiple signals (CMS) test, we investigated 412 candidate signals and leveraged functional annotation, protein structure modeling,...

Journal: :Genomics data 2016
Kun Sun Liang Zhou Yu Zhao Huating Wang Hao Sun

Little is known how lincRNAs are involved in skeletal myogenesis. Here we describe the discovery and functional annotation of Linc-YY1, a novel lincRNA originating from the promoter of the transcription factor (TF) Yin Yang 1 (YY1). Starting from whole transcriptome shotgun sequencing (a.k.a. RNA-seq) data from muscle C2C12 cells, a series of bioinformatics analysis was applied towards the iden...

Journal: :Cell 2011
Igor Ulitsky Alena Shkumatava Calvin H. Jan Hazel Sive David P. Bartel

Thousands of long intervening noncoding RNAs (lincRNAs) have been identified in mammals. To better understand the evolution and functions of these enigmatic RNAs, we used chromatin marks, poly(A)-site mapping and RNA-Seq data to identify more than 550 distinct lincRNAs in zebrafish. Although these shared many characteristics with mammalian lincRNAs, only 29 had detectable sequence similarity wi...

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