We have investigated the effects of mixed Na+: Mg2+ ionic solutions on the stability of the nonspecific lac repressor-DNA complex. The effects of Mg2+ are simply interpreted in terms of its role as a competitor (with repressor) for DNA sites. From these studies, the binding constant of the Mg-DNA complex can be determined as a function of the concentration of Na+. We have used this information ...

In this work, we determined thermophysical properties such as electrical conductivity and refractive index for 1-propyl-3-methylimidazolium bromide, [PrMIm]Br in ternary mixtures of [PrMIm]Br + ethylene carbonate + water at T = (298.2, 308.2 and 318.2) K and 0.1MPa. Conductometric measurements were carried out for [PrMIm]Br ionic liquid in ethylene carbonate + water solvent mixture in various c...

To investigate the in vivo effects of macromolecular crowding we examined the effect of inert macromolecules such as polyvinyl alcohol and polyethylene glycol on the in vitro activity of recA protein. The addition of either of these volume-occupying agents enables recA protein to promote homologous pairing and exchange of DNA strands at an otherwise nonpermissive magnesium ion concentration. In...

BACKGROUND The P-type ATPase family constitutes a collection of ion pumps that form phosphorylated intermediates during ion transport. One of the best known members of this family is the Na⁺,K⁺-ATPase. The catalytic subunit of the Na⁺,K⁺-ATPase includes several functional domains that determine its enzymatic and trafficking properties. METHODOLOGY/PRINCIPAL FINDINGS Using the yeast two-hybrid...

Molecular encapsulation of anionic porphyrins in NH2-terminated polyamidoamine (PAMAM) dendrimers and the interfacial behavior of the dendrimer-porphyrin associates were studied at the polarized water|1,2-dichloroethane (DCE) interface. Formation of the ion associates was significantly dependent on the pH condition and on generation of dendrimers. 5,10,15,20-Tetrakis(4-sulfonatophenyl)porphyrin...

Proteins interact with nucleic acids to control gene regulation and expression. In order to understand these control processes in atomic detail, the structural and energetic basis for the specificity and stability of binding must be elucidated. Various protein-DNA complexes were studied in detail previously. ProteintRNA interactions are also very specific but have not been studied computational...