نتایج جستجو برای: comparative genomics

تعداد نتایج: 269394  

Journal: :Structure 2008
John Moult

team research. Moreover, to address fundamental problems in medicine and biology, there is no one tool that can provide all the answers. Thus, in addition to developing specific technologies, a second set of programs is envisioned, focusing on bringing together topicor disease-based expertise with multiple structural methodologies to work on a key problem in medicine and biology. For these team...

Journal: :The Indian journal of medical research 2004
Joseph J Ferretti Dragana Ajdic W Michael McShan

Microbial genome sequencing has produced an unprecedented amount of new information and insights into an organism's metabolic activities, virulence properties, and evolution. The complete genome sequence has been reported for four different species of streptococci, including Streptococcus pyogenes, S. agalactiae, S. pneumoniae and S. mutans. Comparative genome analysis among organisms of the sa...

Journal: :The Plant cell 2000
A H Paterson J E Bowers M D Burow X Draye C G Elsik C X Jiang C S Katsar T H Lan Y R Lin R Ming R J Wright

Comparative genomics, the study of the similarities and differences in structure and function of hereditary information across taxa, uses molecular tools to investigate many notions that long preceded identification of DNA as the hereditary molecule. Vavilov’s (1922) law of homologous series in variation was an early suggestion of the similarities in the genetic blueprints of many (plant) speci...

Journal: :Bioinformatics 2003
Tao Xie Leroy E. Hood

SUMMARY ACGT (a comparative genomics tool) is a genomic DNA sequence comparison viewer and analyzer. It can read a pair of DNA sequences in GenBank, Embl or Fasta formats, with or without a comparison file, and provide users with many options to view and analyze the similarities between the input sequences. It is written in Java and can be run on Unix, Linux and Windows platforms. AVAILABILIT...

Journal: :Science 2000
G M Rubin M D Yandell J R Wortman G L Gabor Miklos C R Nelson I K Hariharan M E Fortini P W Li R Apweiler W Fleischmann J M Cherry S Henikoff M P Skupski S Misra M Ashburner E Birney M S Boguski T Brody P Brokstein S E Celniker S A Chervitz D Coates A Cravchik A Gabrielian R F Galle W M Gelbart R A George L S Goldstein F Gong P Guan N L Harris B A Hay R A Hoskins J Li Z Li R O Hynes S J Jones P M Kuehl B Lemaitre J T Littleton D K Morrison C Mungall P H O'Farrell O K Pickeral C Shue L B Vosshall J Zhang Q Zhao X H Zheng S Lewis

A comparative analysis of the genomes of Drosophila melanogaster, Caenorhabditis elegans, and Saccharomyces cerevisiae-and the proteins they are predicted to encode-was undertaken in the context of cellular, developmental, and evolutionary processes. The nonredundant protein sets of flies and worms are similar in size and are only twice that of yeast, but different gene families are expanded in...

2003
Eric S. Lander Bonnie A. Berger Arthur C. Smith

Journal: :Journal of bacteriology 2009
Olga Tsoy Dmitry Ravcheev Arcady Mushegian

Ethanolamine can be used as a source of carbon and nitrogen by phylogenetically diverse bacteria. Ethanolamine-ammonia lyase, the enzyme that breaks ethanolamine into acetaldehyde and ammonia, is encoded by the gene tandem eutBC. Despite extensive studies of ethanolamine utilization in Salmonella enterica serovar Typhimurium, much remains to be learned about EutBC structure and catalytic mechan...

2005
Eileen T. Kraemer YANQI SU John A. Miller Jessica C. Kissinger Maureen Grasso Haiming Wang

As an increasing number of genomes are sequenced, comparative genomics analysis at different evolutionary distances plays a crucial role in decoding genomic information and discovering the similarities and differences between the genomes. It consists of three process steps: data preparation, sequence alignment, and visualization. In this thesis the major alignment methods and visualization tool...

Journal: :Annual review of microbiology 2005
Gianni Liti Edward J Louis

Recent sequencing efforts and experiments have advanced our understanding of genome evolution in yeasts, particularly the Saccharomyces yeasts. The ancestral genome of the Saccharomyces sensu stricto complex has been subject to both whole-genome duplication, followed by massive sequence loss and divergence, and segmental duplication. In addition the subtelomeric regions are subject to further d...

Journal: :Nucleic acids research 2003
Michele E. Clamp T. Daniel Andrews Daniel Barker Paul Bevan Graham Cameron Yuan Chen Laura Clarke Antony Cox James A. Cuff Val Curwen Thomas A. Down Richard Durbin Eduardo Eyras James G. R. Gilbert Martin Hammond Tim J. P. Hubbard Arek Kasprzyk Damian Keefe Heikki Lehväslaiho Vivek Iyer Craig Melsopp Emmanuel Mongin Roger Pettett Simon C. Potter Alistair G. Rust Esther Schmidt Stephen M. J. Searle Guy Slater James A. Smith William Spooner Arne Stabenau Jim Stalker Elia Stupka Abel Ureta-Vidal Imre Vastrik Ewan Birney

The Ensembl (http://www.ensembl.org/) database project provides a bioinformatics framework to organise biology around the sequences of large genomes. It is a comprehensive source of stable automatic annotation of human, mouse and other genome sequences, available as either an interactive web site or as flat files. Ensembl also integrates manually annotated gene structures from external sources ...

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