نتایج جستجو برای: admixture elements

تعداد نتایج: 281614  

Journal: :Molecular ecology 2006
Jukka Corander Pekka Marttinen

Bayesian statistical methods for the estimation of hidden genetic structure of populations have gained considerable popularity in the recent years. Utilizing molecular marker data, Bayesian mixture models attempt to identify a hidden population structure by clustering individuals into genetically divergent groups, whereas admixture models target at separating the ancestral sources of the allele...

Journal: :Bioinformatics 2017
Emil Jørsboe Kristian Hanghøj Anders Albrechtsen

Motivation Estimation of admixture proportions and principal component analysis (PCA) are fundamental tools in populations genetics. However, applying these methods to low- or mid-depth sequencing data without taking genotype uncertainty into account can introduce biases. Results Here we present fastNGSadmix, a tool to fast and reliably estimate admixture proportions and perform PCA from next...

Journal: :Journal of computational biology : a journal of computational molecular cell biology 2010
Sivan Bercovici Dan Geiger

Abstract Admixture mapping is a gene mapping approach used for the identification of genomic regions harboring disease susceptibility genes in the case of recently admixed populations such as African Americans. We present a novel method for admixture mapping, called admixture aberration analysis (AAA) that uses a DNA pool of affected admixed individuals. We demonstrate through simulations that ...

2017
Karolina Węcek Stefanie Hartmann Johanna L. A. Paijmans Ulrike Taron Georgios Xenikoudakis James A. Cahill Peter D. Heintzman Beth Shapiro Gennady Baryshnikov Aleksei N. Bunevich Jennifer J. Crees Roland Dobosz Ninna Manaserian Henryk Okarma Małgorzata Tokarska Samuel T. Turvey Jan M. Wójcik Waldemar Żyła Jacek M. Szymura Michael Hofreiter Axel Barlow

Retracing complex population processes that precede extreme bottlenecks may be impossible using data from living individuals. The wisent (Bison bonasus), Europe's largest terrestrial mammal, exemplifies such a population history, having gone extinct in the wild but subsequently restored by captive breeding efforts. Using low coverage genomic data from modern and historical individuals, we inves...

2017
Nina Hollfelder Carina M Schlebusch Torsten Günther Hiba Babiker Hisham Y Hassan Mattias Jakobsson

Northeast Africa has a long history of human habitation, with fossil-finds from the earliest anatomically modern humans, and housing ancient civilizations. The region is also the gate-way out of Africa, as well as a portal for migration into Africa from Eurasia via the Middle East and the Arabian Peninsula. We investigate the population history of northeast Africa by genotyping ~3.9 million SNP...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2010
Katarzyna Bryc Christopher Velez Tatiana Karafet Andres Moreno-Estrada Andy Reynolds Adam Auton Michael Hammer Carlos D Bustamante Harry Ostrer

Hispanic/Latino populations possess a complex genetic structure that reflects recent admixture among and potentially ancient substructure within Native American, European, and West African source populations. Here, we quantify genome-wide patterns of SNP and haplotype variation among 100 individuals with ancestry from Ecuador, Colombia, Puerto Rico, and the Dominican Republic genotyped on the I...

2011
Guolian Kang Guimin Gao Sanjay Shete David T. Redden Bao-Li Chang Timothy R. Rebbeck Jill S. Barnholtz-Sloan Nicholas M. Pajewski David B. Allison

As genome-wide association studies expand beyond populations of European ancestry, the role of admixture will become increasingly important in the continued discovery and fine-mapping of variation influencing complex traits. Although admixture is commonly viewed as a confounding influence in association studies, approaches such as admixture mapping have demonstrated its ability to highlight dis...

2006
Tomasz Plewa

We present a detonating failed deflagration model of Type Ia supernovae. In this model, the thermonuclear explosion of a massive white dwarf follows an off-center deflagration. We conduct a survey of asymmetric ignition configurations initiated at various distances from the stellar center. In all cases studied, we find that only a small amount of stellar fuel is consumed during deflagration pha...

Journal: :Current Opinion in Genetics & Development 2018

2014
Erik Eschbach Arne W Nolte Klaus Kohlmann Petra Kersten Jochem Kail Robert Arlinghaus

In addition to ecological factors, evolutionary processes can determine the invasion success of a species. In particular, genetic admixture has the potential to induce rapid evolutionary change, which can result from natural or human-assisted secondary contact between differentiated populations. We studied the recent range expansion of zander in Germany focusing on the interplay between invasio...

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