The genus Rineloricaria is a Neotropical freshwater fish group with a long and problematic taxonomic history, attributed to the large number of species and the pronounced similarity among them. In the present work, taxonomic information and different molecular approaches were used to identify species boundaries and characterize independent evolutionary units. We analyzed 228 samples assembled i...

Determining the taxonomic lineage of DNA sequences is an important step in metagenomic analysis. Short DNA fragments from next-generation sequencing projects and microbes that lack close relatives in reference sequenced genome databases pose significant problems to taxonomic attribution methods. Our new classification algorithm, RITA (Rapid Identification of Taxonomic Assignments), uses the agr...

The concept of β-diversity, defined as dissimilarity among communities, has been widely used to investigate biodiversity patterns and community assembly rules. However, in ecosystems with high taxonomic β-diversity, due to marked environmental gradients, the level of functional β-diversity among communities is largely overlooked while it may reveal processes shaping community structure. Here, d...

Whereas many nemerteans (ribbon worms; phylum Nemertea) can be identified from external characters if observed alive, many are still problematic. When it comes to preserved specimens (as in e.g. marine inventories), there is a particular need for specimen identifier alternatives. Here, we evaluate the utility of COI (cytochrome c oxidase subunit I) as a single-locus barcoding gene. We sequenced...

Classifications and phylogenetic inferences of organismal groups change in light of new insights. Over time these changes can result in an imperfect tracking of taxonomic perspectives through the re-/use of Code-compliant or informal names. To mitigate these limitations, we introduce a novel approach for aligning taxonomies through the interaction of human experts and logic reasoners. We explor...

Analyses of the taxonomic diversity associated with the human microbiome continue to be an area of great importance. The study of the nature and extent of the commonly shared taxa ("core"), versus those less prevalent, establishes a baseline for comparing healthy and diseased groups by quantifying the variation among people, across body habitats and over time. The National Institutes of Health ...

Two studies examined how lexical information contained in words affects people’s category representations. Some words are lexically suggestive regarding the taxonomic position of their referent (e.g., bumblebee, starfish). However, this information differs from language to language (e.g., in Dutch the equivalent words hold no taxonomic information: hommel, vlinder). Three language groups, Dutch...

Premise of research. Pollen and spores (sporomorphs) are a valuable record of plant life and have provided information on subjects ranging from the nature and timing of evolutionary events to the relationship between vegetation and climate. However, sporomorphs can be morphologically similar at the species, genus, or family level. Studies of extinct plant groups in pre-Quaternary time often inc...

The relationship of the syntagmatic-paradigmatic shift to recall was examined in college-aged adults and young children. Forced experience (priming) with taxonomic or functional modes of categorization produced modest effects on children's recall and powerful effects on their style of recall, as measured by taxonomic and functional intrusions. No comparable effects were observed with adults, de...