نتایج جستجو برای: seq ssr

تعداد نتایج: 22807  

2017
Siyu Hou Zhaoxia Sun Yaoshen Li Yijie Wang Hubin Ling Guofang Xing Yuanhuai Han Hongying Li

PREMISE OF THE STUDY Proso millet (Panicum miliaceum; Poaceae) is a minor crop with good nutritional qualities and strong tolerance to drought stress and soil infertility. However, studies on genetic diversity have been limited due to a lack of efficient genetic markers. METHODS Illumina sequencing technology was used to generate short read sequences of proso millet, and de novo transcriptome...

Journal: :Genome 1997
N Diwan A A Bhagwat G B Bauchan P B Cregan

Simple sequence repeat (SSR) or microsatellite DNA markers have been shown to function well in plant and mammalian species for genetic map construction and genotype identification. The objectives of the work reported here were to search GenBank for the presence of SSR-containing sequences from the genus Medicago, to assess the presence and frequency of SSR DNA in the alfalfa (Medicago sativa (L...

2011
Yanfang Zhu Jin Hu Rui Han Yang Wang Shuijin Zhu

DNA based molecular markers allow precise, objective and rapid cultivar identification. In this study, five ISSR and two sets of fluorescence-labeled TP-M13-SSR markers were applied for discrimination of eight closely related wheat cultivars. Five ISSR primers revealed a total of 43 distinct reproducible bands, 29 (67.44%) of the 43 bands were polymorphic. The number of polymorphic bands detect...

Journal: :DNA research : an international journal for rapid publication of reports on genes and genomes 2002
Susan R McCouch Leonid Teytelman Yunbi Xu Katarzyna B Lobos Karen Clare Mark Walton Binying Fu Reycel Maghirang Zhikang Li Yongzhong Xing Qifa Zhang Izumi Kono Masahiro Yano Robert Fjellstrom Genevieve DeClerck David Schneider Samuel Cartinhour Doreen Ware Lincoln Stein

A total of 2414 new di-, tri- and tetra-nucleotide non-redundant SSR primer pairs, representing 2240 unique marker loci, have been developed and experimentally validated for rice (Oryza sativa L.). Duplicate primer pairs are reported for 7% (174) of the loci. The majority (92%) of primer pairs were developed in regions flanking perfect repeats > or = 24 bp in length. Using electronic PCR (e-PCR...

Journal: :Genetics and molecular research : GMR 2013
D Molin C J Coelho D S Máximo F S Ferreira J R Gardingo R R Matiello

Maize landraces derived from tropical germplasm represent an important source of genetic variability, which is currently poorly understood and under-exploited by Brazilian crop breeding programs. The aims of our study were to a) estimate the genetic diversity across 48 varieties of maize landraces cultivated at different locations in the States of Rio Grande do Sul (RS) and Paraná (PR) by ...

Journal: :Genetics and molecular research : GMR 2016
W R Ko K J Sa N S Roy H-J Choi J K Lee

In this study, we compared the efficiency of simple sequence repeat (SSR) and sequence specific amplified polymorphism (SSAP) markers for analyzing genetic diversity, genetic relationships, and population structure of 87 super sweet corn inbred lines from different origins. SSR markers showed higher average gene diversity and Shannon's information index than SSAP markers. To assess genetic rela...

Journal: :Bulletin of entomological research 2012
S Jing B Liu L Peng X Peng L Zhu Q Fu G He

To assess genetic diversity in populations of the brown planthopper (Nilaparvata lugens Stål) (Homoptera: Delphacidae), we have developed and applied microsatellite, or simple sequence repeat (SSR), markers from expressed sequence tags (ESTs). We found that the brown planthopper clusters of ESTs were rich in SSRs with unique frequencies and distributions of SSR motifs. Three hundred and fifty-o...

2013
M. Moniruzzaman

SSR or microsatellite markers are proved to be ideal for making genetic maps, assisting selection and studying genetic diversity in germplasm. SSR markers are playing important role to identify gene for salt tolerance that can be helpful for plant breeders to develop new cultivars. The experiment was conducted during the period from July 2009 to November 2010 in the experimental field and Biote...

2015
Honglin Chen Liping Liu Lixia Wang Suhua Wang Prakit Somta Xuzhen Cheng Mukesh Jain

The adzuki bean (Vigna angularis (Ohwi) Ohwi and Ohashi) is an important grain legume of Asia. It is cultivated mainly in China, Japan and Korea. Despite its importance, few genomic resources are available for molecular genetic research of adzuki bean. In this study, we developed EST-SSR markers for the adzuki bean through next-generation sequencing. More than 112 million high-quality cDNA sequ...

2017
Myung Jong Kim Beiming Cao Ted Mau Jun Wang

Silent speech recognition (SSR) converts non-audio information such as articulatory (tongue and lip) movements to text. Articulatory movements generally have less information than acoustic features for speech recognition, and therefore, the performance of SSR may be limited. Multiview representation learning, which can learn better representations by analyzing multiple information sources simul...

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