نتایج جستجو برای: phic31 integrase

تعداد نتایج: 3653  

2013
Allison Ballandras-Colas Hema Naraharisetty Xiang Li Erik Serrao Alan Engelman

Integrase is an essential retroviral enzyme, catalyzing the stable integration of reverse transcribed DNA into cellular DNA. Several aspects of the integration mechanism, including the length of host DNA sequence duplication flanking the integrated provirus, which can be from 4 to 6 bp, and the nucleotide preferences at the site of integration, are thought to cluster among the different retrovi...

Journal: :Infection and immunity 2006
Maite Muniesa Mark A Schembri Nadja Hauf Trinad Chakraborty

The locus of enterocyte effacement (LEE) is a large multigene chromosomal segment encoding gene products responsible for the generation of attaching and effacing lesions in many diarrheagenic Escherichia coli strains. A recently sequenced LEE harboring a pathogenicity island (PAI) from a Shiga toxin E. coli serotype O26 strain revealed a LEE PAI (designated LEE O26) almost identical to that obt...

Journal: :Journal of virology 2008
Jangsuk Oh Kevin W Chang Stephen H Hughes

The two ends of RSV linear DNA are independently inserted into host DNA by integrase in vivo. We previously showed that the range of U3 sequences that are acceptable substrates for integrase appeared to be greater than the range of acceptable U5 sequences in vivo. We have done additional experiments to determine which U3 sequences are good integrase substrates. On the U3 end, there does not app...

Journal: :Journal of virology 2007
Dirk Daelemans Richard Lu Erik De Clercq Alan Engelman

Integrase is actively studied as an antiviral target, but many inhibitors selected from biochemical screens fail to inhibit human immunodeficiency virus (HIV) replication or primarily affect off-site targets. Here we develop and validate a replication-competent, simian virus 40-HIV integrase mutant chimera as a novel tool to classify the mechanism of action of potential integrase inhibitors. Wh...

Journal: :Nucleic Acids Research 2006
Gholam Khodakaramian Sarah Lissenden Bertolt Gust Laura Moir Paul A. Hoskisson Keith F. Chater Margaret C. M. Smith

We report a system for the efficient removal of a marker flanked by two loxP sites in Streptomyces coelicolor, using a derivative of the temperate phage phiC31 that expresses Cre recombinase during a transient infection. As the test case for this recombinant phage (called Cre-phage), we present the construction of an in-frame deletion of a gene, pglW, required for phage growth limitation or Pgl...

2013
Xiaojie Qi Edwin Vargas Liza Larsen Whitney Knapp G. Wesley Hatfield Richard Lathrop Suzanne Sandmeyer

Chimeric proteins are used to study protein domain functions and to recombine protein domains for novel or optimal functions. We used a library of chimeric integrase proteins to study DNA integration specificity. The library was constructed using a directed shuffling method that we adapted from fusion PCR. This method easily and accurately shuffles multiple DNA gene sequences simultaneously at ...

2011
Geoffrey S. Gottlieb Robert A. Smith Ndeye Mery Dia Badiane Selly Ba Stephen E. Hawes Macoumba Toure Alison K. Starling Fatou Traore Fatima Sall Stephen L. Cherne Joshua Stern Kim G. Wong Paul Lu Moon Kim Dana N. Raugi Airin Lam James I. Mullins Nancy B. Kiviat

BACKGROUND Antiretroviral therapy for HIV-2 infection is hampered by intrinsic resistance to many of the drugs used to treat HIV-1. Limited studies suggest that the integrase inhibitors (INIs) raltegravir and elvitegravir have potent activity against HIV-2 in culture and in infected patients. There is a paucity of data on genotypic variation in HIV-2 integrase that might confer intrinsic or tra...

Journal: :AIDS Research and Human Retroviruses 2021

International guidelines recommend the use of integrase strand transfer inhibitor (INI)-based regimens as first-line antiretroviral (ARV) in both naive and experienced HIV-infected patients. We ana...

Journal: :The Journal of biological chemistry 2012
Jacques J Kessl Nivedita Jena Yasuhiro Koh Humeyra Taskent-Sezgin Alison Slaughter Lei Feng Suresh de Silva Li Wu Stuart F J Le Grice Alan Engelman James R Fuchs Mamuka Kvaratskhelia

The multifunctional HIV-1 enzyme integrase interacts with viral DNA and its key cellular cofactor LEDGF to effectively integrate the reverse transcript into a host cell chromosome. These interactions are crucial for HIV-1 replication and present attractive targets for antiviral therapy. Recently, 2-(quinolin-3-yl) acetic acid derivatives were reported to selectively inhibit the integrase-LEDGF ...

Journal: :Journal of medicinal chemistry 1999
M V Reddy M R Rao D Rhodes M S Hansen K Rubins F D Bushman Y Venkateswarlu D J Faulkner

HIV-1 integrase is an attractive target for anti-retroviral chemotherapy, but to date no clinically useful inhibitors have been developed. We have screened diverse marine natural products for compounds active against integrase in vitro and found a series of ascidian alkaloids, the lamellarins, that show selective inhibition. A new member of the family named lamellarin alpha 20-sulfate (1), the ...

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