In comparison with retrotransposons, which comprise the majority of the Triticeae genomes, very few class 2 transposons have been described in these genomes. Based on the recent discovery of a local accumulation of CACTA elements at the Glu-A3 loci in the two wheat species Triticum monococcum and Triticum durum, we performed a database search for additional such elements in Triticeae spp. A com...

In comparison with retrotransposons, which comprise the majority of the Triticeae genomes, very few class 2 transposons have been described in these genomes. Based on the recent discovery of a local accumulation of CACTA elements at the Glu-A3 loci in the two wheat species Triticum monococcum and Triticum durum, we performed a database search for additional such elements in Triticeae spp. A com...

Rice crop is highly vulnerable at all stages of growth to different pathogens that affect the quality and quantity its yield. Among diseases, Bacterial blight rice (Xanthomonas oryzae pv. oryzae), a deadly bacterial disease among most destructive affliction cultivated (Oryza sativa O. glaberrima). In severe epidemics, loss may be as high 75 percent, millions hectares are infected annually. Biol...

Transcription factors (TFs) are major players in gene regulatory networks and interactions between TFs and their target genes furnish spatiotemporal patterns of gene expression. Establishing the architecture of regulatory networks requires gathering information on TFs, their targets in the genome, and the corresponding binding sites. We have developed GRASSIUS (Grass Regulatory Information Serv...

This study was conducted to examine the variabilities in the chronology of vegetative and reproductive development of weedy rice (Oryza spp.) in comparison with commercial varieties. Data at different growth stages of 14 weedy rice morphotypes and 4 commercial rice varieties were recorded and analysed. Plant height of all weedy rice morphotypes were observed to be significantly higher compared ...

The genome-wide protein sequences from Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa) spp. japonica were clustered into families using sequence similarity and domain-based clustering. The two fundamentally different methods resulted in separate cluster sets with complementary properties to compensate the limitations for accurate family analysis. Functional names for the identified f...

The rice leaffolder, Cnaphalocrocis medinalis Guenée (Lepidoptera: Pyralidae), is one of the most destructive pests of rice. Electrophysiological responses of this species to 38 synthetic volatiles known to be released from rice plants (Poaceae: Oryza spp.) were studied using the electroantennogram (EAG) method. Compounds that elicited the strongest EAG responses for each physiological conditio...

The genome-wide protein sequences from Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa) spp. japonica were clustered into families using sequence similarity and domain-based clustering. The two fundamentally different methods resulted in separate cluster sets with complementary properties to compensate the limitations for accurate family analysis. Functional names for the identified f...

In semiarid regions, soil salinity, like drought, restricts crop productivity, causing food shortages among most inhabitants—the smallholder subsistence farmers. Seasonal wetlands formed in these regions during the rainy seasons could be utilised for rice (Oryza spp.) cultivation to increase security, but is sensitive salinity. Field and greenhouse-pot experiments were performed at University o...

Introduction. The root-lesion nematodes, Pratylenchus spp., have a wide host range and reduce the yield of different crops. Information on diversity species is scarce in Costa Rica. Objective. To identify associated with 12 crops based D3 region 28S rDNA gene. Materials methods. During 2013 to 2015, root samples were collected Alajuela, Cartago, Guanacaste, Heredia, San José rice (Oryza sativa)...