نتایج جستجو برای: estexpressed sequence tags

تعداد نتایج: 419314  

2012
V. Bhuvaneswari

The sequence data maintained in public databases are available in heterogeneous formats like FASTA, XML, and ASN1. The XML representation of data is heterogeneous in nature with different DTD in various databases. The difference lies in the representation of sequence description as XML tags. The protein and genomic data in XML format in Genbank has more than 3500 tags to represent the functiona...

Journal: :Nucleic acids research 2001
M J Hayden P J Sharp

We describe a technique, sequence-tagged microsatellite profiling (STMP), to rapidly generate large numbers of simple sequence repeat (SSR) markers from genomic or cDNA. This technique eliminates the need for library screening to identify SSR-containing clones and provides an approximately 25-fold increase in sequencing throughput compared to traditional methods. STMP generates short but charac...

Journal: :Genetics 2015
Rebecca E Zordan Brian J Beliveau Jonathan A Trow Nancy L Craig Brendan P Cormack

Peptide tags fused to proteins are used in a variety of applications, including as affinity tags for purification, epitope tags for immunodetection, or fluorescent protein tags for visualization. However, the peptide tags can disrupt the target protein function. When function is disrupted by fusing a peptide to either the N or C terminus of the protein of interest, identifying alternative ways ...

Journal: :The New phytologist 2005
Lieven Sterck Stephane Rombauts Stefan Jansson Fredrik Sterky Pierre Rouzé Yves Van de Peer

We analysed the publicly available expressed sequence tag (EST) collections for the genus Populus to examine whether evidence can be found for large-scale gene-duplication events in the evolutionary past of this genus. The ESTs were clustered into unigenes for each poplar species examined. Gene families were constructed for all proteins deduced from these unigenes, and K(S) dating was performed...

Journal: :Proceedings of the National Academy of Sciences of the United States of America 2002
Robert L Strausberg Elise A Feingold Lynette H Grouse Jeffery G Derge Richard D Klausner Francis S Collins Lukas Wagner Carolyn M Shenmen Gregory D Schuler Stephen F Altschul Barry Zeeberg Kenneth H Buetow Carl F Schaefer Narayan K Bhat Ralph F Hopkins Heather Jordan Troy Moore Steve I Max Jun Wang Florence Hsieh Luda Diatchenko Kate Marusina Andrew A Farmer Gerald M Rubin Ling Hong Mark Stapleton M Bento Soares Maria F Bonaldo Tom L Casavant Todd E Scheetz Michael J Brownstein Ted B Usdin Shiraki Toshiyuki Piero Carninci Christa Prange Sam S Raha Naomi A Loquellano Garrick J Peters Rick D Abramson Sara J Mullahy Stephanie A Bosak Paul J McEwan Kevin J McKernan Joel A Malek Preethi H Gunaratne Stephen Richards Kim C Worley Sarah Hale Angela M Garcia Laura J Gay Stephen W Hulyk Debbie K Villalon Donna M Muzny Erica J Sodergren Xiuhua Lu Richard A Gibbs Jessica Fahey Erin Helton Mark Ketteman Anuradha Madan Stephanie Rodrigues Amy Sanchez Michelle Whiting Anup Madan Alice C Young Yuriy Shevchenko Gerard G Bouffard Robert W Blakesley Jeffrey W Touchman Eric D Green Mark C Dickson Alex C Rodriguez Jane Grimwood Jeremy Schmutz Richard M Myers Yaron S N Butterfield Martin I Krzywinski Ursula Skalska Duane E Smailus Angelique Schnerch Jacqueline E Schein Steven J M Jones Marco A Marra

The National Institutes of Health Mammalian Gene Collection (MGC) Program is a multiinstitutional effort to identify and sequence a cDNA clone containing a complete ORF for each human and mouse gene. ESTs were generated from libraries enriched for full-length cDNAs and analyzed to identify candidate full-ORF clones, which then were sequenced to high accuracy. The MGC has currently sequenced and...

2001
Michael E Addis

Although treatment manuals have existed for many years, controversy surrounds their use and dissemination. In a previous article, we addressed assets and liabilities of using empirically supported treatments (ESTs) in psychotherapy, as well as obstacles to disseminating such treatments. In this article, we argue that using EST aids clinical work and is ethically sound. At the same time, we draw...

Journal: :Nucleic acids research 2003
Anton Nekrutenko Wen-Yu Chung Wen-Hsiung Li

Since a large number of computationally predicted exons are not supported by existing sequence (e.g. ESTs) or experimental (e.g. expression analysis) data they need to be validated by other methods. ETOPE is designed to test computational predictions by using signals that have not been included in any current computational prediction method. The test is based on the ratio of non-synonymous to s...

2010
Gianluca Castelnuovo

THE FIELD OF RESEARCH AND PRACTICE IN PSYCHOTHERAPY HAS BEEN DEEPLY INFLUENCED BY TWO DIFFERENT APPROACHES: the empirically supported treatments (ESTs) movement, linked with the evidence-based medicine (EBM) perspective and the "Common Factors" approach, typically connected with the "Dodo Bird Verdict". About the first perspective, since 1998 a list of ESTs has been established in mental health...

2012
Keng-Hoong Ng Chin-Kuan Ho Somnuk Phon-Amnuaisuk

BACKGROUND Clustering is a key step in the processing of Expressed Sequence Tags (ESTs). The primary goal of clustering is to put ESTs from the same transcript of a single gene into a unique cluster. Recent EST clustering algorithms mostly adopt the alignment-free distance measures, where they tend to yield acceptable clustering accuracies with reasonable computational time. Despite the fact th...

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